Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1304 ATGATGGGGCTTCATGATAGACGACATATCCTAATAATCCTCTCAACATTATGCATAATAGTTAGTTTTGGTAGTTGTGATGGAAAAAGGGAAGGGGGCCAAATAGAGAGTAGTGTTGATGATGGTTCAGGTTATTATATTGGTGATTGGAAATTCAAGGGGCTGTTTGGGCAAAGCAGAGAGAATGAAGATGGTACGATGAGTGGTTTAAAGAGGTTTGATGAGAAGAATAATAGGTTTGGTGGGACTTCAGCTTCGCTTAAAATTGTTAATGTGAATGATTATAGAGGTGGAGGTGTTGGTGGAGGGAGGACTCCTTGTTATGATGACACACAGGCATTTGAGAAGGCTTGGGAAATAGCATGTTCGACCGGGGATGTGATTCTTCTAGTGCCTGAAGGAAATTATCTTCTCAAACCAATAAAATTCTCTGGGCCTTGCAAATCTTACATCCAAATCCAGCTTTATGGAACGCTGGATGCATCAGATGAGGCATTGGATTACAGCAGAGACAGCAGGCACTGGCTCATATTCGAGAGTATTAAGAAACTGGCCATCTATGGTATTGGTGGAGTCATCAATGGAAATGGTGACATCTGGTGGCAAAACTCTTGCAAAATCAACAAATCTCTTCCCTGCAAGGAGGCCCCAACGGCTTTGAGTTTCATTCGTTGCCAGAACTTGATAGTAGAGGGGCTGAGCATAGTAAATGCGCAGCAAATGCACGTGTCATTCCAAGACTCTAACTACGTTAAGGTTTCTGACCTCACAGTAACCGCACCAGGGAACAGCCCCAACACCGATGGCATTCACGTCACTAATACCCAGAACCTCCAAATCTCTAACTCTCTTATCGCAACTGGTGACGATTGCATATCAATTGTGAGTGGATCCCAGAATATATTAGCCAATAACATAACATGCGGACCCGGACATGGTATCAGTATCGGAAGTTTAGGGGCTGGAAAATCGAAGGCATTTGTTTCAGGGATAACTGTGAAGGGAGCAAAGCTTTACGACACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGTCAGGAGTTGCTACCAACATCCAGTTCATCGACATAGAAATGAAAAATGTGACCAATCCCATAATAATTGACCAGAACTATTGCGACCAACCCAAGCCATGCAAAAAGCAAAAATCAGCGGTTGAGATATCGAAGGTTTTATACCAAGGCATAAGAGGCACGAGTGCGTCGGACGTGGCAGTGAAGTTGGATTGCAGCGAGAACTACCCGTGCGAGGACATAGAGTTGGAGGACATATATCTGCAGAGCCTCCAAGGCCGAGATCTTGATGCTTTCTGCAACAATGCTCATTTGTCTTATTTTGGAGACGTCAACCCTTCCTGCTGTACCACCACCACCTCCTCCACCTGA 1410 0.444 MMGLHDRRHILIILSTLCIIVSFGSCDGKREGGQIESSVDDGSGYYIGDWKFKGLFGQSRENEDGTMSGLKRFDEKNNRFGGTSASLKIVNVNDYRGGGVGGGRTPCYDDTQAFEKAWEIACSTGDVILLVPEGNYLLKPIKFSGPCKSYIQIQLYGTLDASDEALDYSRDSRHWLIFESIKKLAIYGIGGVINGNGDIWWQNSCKINKSLPCKEAPTALSFIRCQNLIVEGLSIVNAQQMHVSFQDSNYVKVSDLTVTAPGNSPNTDGIHVTNTQNLQISNSLIATGDDCISIVSGSQNILANNITCGPGHGISIGSLGAGKSKAFVSGITVKGAKLYDTTNGVRIKTWQGGSGVATNIQFIDIEMKNVTNPIIIDQNYCDQPKPCKKQKSAVEISKVLYQGIRGTSASDVAVKLDCSENYPCEDIELEDIYLQSLQGRDLDAFCNNAHLSYFGDVNPSCCTTTTSST* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1304 469 ProSitePatterns Polygalacturonase active site. 305 318 IPR000743 GO:0004650|GO:0005975
Aev06g1304 469 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Aev06g1304 469 PANTHER ENDO POLYGALACTURONASE 79 464 - -
Aev06g1304 469 SUPERFAMILY Pectin lyase-like 86 464 IPR011050 -
Aev06g1304 469 PANTHER - 79 464 - -
Aev06g1304 469 SMART pbh1 248 274 IPR006626 -
Aev06g1304 469 SMART pbh1 297 318 IPR006626 -
Aev06g1304 469 SMART pbh1 275 296 IPR006626 -
Aev06g1304 469 SMART pbh1 357 378 IPR006626 -
Aev06g1304 469 SMART pbh1 328 349 IPR006626 -
Aev06g1304 469 Gene3D - 81 469 IPR012334 -
Aev06g1304 469 Pfam Glycosyl hydrolases family 28 127 450 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1304 Aev-Chr6 8757348 8759691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1304 8 461 Glycoside Hydrolase AT3G57510 49.891 8.15e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1304 K01184 - gmx:100816917 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g1512 02 16814434 16822740 Aev06g1304 06 8757348 8759691 PCT