Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0540 ATGCAGAGAATGGCGTACTCGTTCCCTGAGGAGGCGCTGGAGCTCGTGTTCACGTTCATAGAGTGCGAGAGGGACAGGAACTCCATCTCGCTGGTGTGCAAGTCATGGTACGAGATCGAGCGGTTGTGCAGGAGGAAGGTGTTCATCGGGAACTGCTATGCCGTGAGCCCTACTATGGTGATCAAGCGGTTTCCGGAGTTGAGATCCCTCTCGCTCAAAGGGAAGCCTCACTTCGCGGACTTCAATTTGGTCCCTGAAGGTTGGGGAGGCTACGCTTGCTCTTGGATCGAGGCCATGTCTAGTGCTTATCCGTGGTTGGAGGAGATCAGGCTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAGCTCATAGCAAAATCCTTCAAGAACTTCAAGGTGTTGGTGCTGACTTCGTGTGAGGGTTTCTCTACTGATGGACTCGCTGCCATTGCCGCTAATTGCAGGAATTTGAGGGAGTTGGATTTGCAGGAGAGTGAAGTGGAGGATCTTAGTGGGCATTGGTTAAGCCATTTTCCTGATTCGTACACATCGTTGGTTTCACTCAACATCTCTTGCTTGAGCAATGAGGTGAGTTTCTCTGCCCTAAAGGGTCTGGTTAGCAGGTGTCCCAACCTGAAGACACTCCGCCTCAATCGTGCTGTGCCACTTCATAGGCTACCCAGCTTGCTTCGTCGGTGTCCTCAGTTGGTTGAGTTAGGCACAGGAGTCTACACTGCTGAAATGCAACCAGAGGTCTTCTCACACCTATCAGCAGCATTTTCTGGGTGCAAGCAATTGACGAGCTTGTCTGGCTTTTGGGATGTTCTCGCATCCTACCTTCCAGCTGTCCATCCCATCTGCTCTGGGCTAACATCACTGAACTTGAGTTATGCTACCATGCGAAGCCCTGATCTGATGAAGCTTGTCAGTAAATGTCCTAATTTGTTGCGGCTATGGGTGCTGGACCACATAGAAGATGCTGGGCTTGATGTTCTTGCTGCTTCATGCAAGGATCTGAGGGAGTTGAGGGTGTTTCCATCTGACCCATTTGGACAAGAACCAAATGTTGAATTGACTGAAAAGGGCCTTGTTCATGTGTCCGAAGGGTGCCCCAAACTCCAGTCAGTTCTGTATTTTTGTCGGCAAATGTCTAATGCAGCCCTAAATACAATTGCCCAGAACAGGCCTAATTTGACTCGTTTCCGCCTATGCATTATTGAGCCTAAAACTCCAGATTATGTTACCCATCAACCTCTGGATGATGGTTTTGGAGCTATTGTAAAGAATTGCAAGGATCTTAAGCGCCTATCCCTTTCTGGTCTTCTCACTGATCGTGTTTTTGAGTATATTGGGACTCATGGGAAGAATCTTGAGATGCTCTCTGTGGCTTTTGCAGGAGATAGTGATCTGGGGCTCCATCACGTGCTTTCTGGGTGTGATAATCTCAGGAAGCTGGAGATTAGGGACTGCCCCTTCGGTGACCAGCCACTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCTTGTAAGCTGCTGGGTCAGAAATTGCCAAGACTCAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGAATCAAGGCCAGAGAGCTGTCCTGTTGAGAAGCTTTACATATACCGGACAGTAGCCGGGCCAAGGTCGGACATGCCTGGTTTTGTGTGGACAATGGGAGATGATTCTTCACTGAGGATCGAGTAA 1755 0.4934 MQRMAYSFPEEALELVFTFIECERDRNSISLVCKSWYEIERLCRRKVFIGNCYAVSPTMVIKRFPELRSLSLKGKPHFADFNLVPEGWGGYACSWIEAMSSAYPWLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFSTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLSNEVSFSALKGLVSRCPNLKTLRLNRAVPLHRLPSLLRRCPQLVELGTGVYTAEMQPEVFSHLSAAFSGCKQLTSLSGFWDVLASYLPAVHPICSGLTSLNLSYATMRSPDLMKLVSKCPNLLRLWVLDHIEDAGLDVLAASCKDLRELRVFPSDPFGQEPNVELTEKGLVHVSEGCPKLQSVLYFCRQMSNAALNTIAQNRPNLTRFRLCIIEPKTPDYVTHQPLDDGFGAIVKNCKDLKRLSLSGLLTDRVFEYIGTHGKNLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDQPLLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDERGPPESRPESCPVEKLYIYRTVAGPRSDMPGFVWTMGDDSSLRIE* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0540 584 Gene3D - 1 44 - -
Aev06g0540 584 Pfam F-box 6 46 IPR041567 -
Aev06g0540 584 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Aev06g0540 584 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 576 - -
Aev06g0540 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 576 - -
Aev06g0540 584 SUPERFAMILY RNI-like 28 404 - -
Aev06g0540 584 SMART LRR_CC_2 103 127 IPR006553 -
Aev06g0540 584 SMART LRR_CC_2 128 153 IPR006553 -
Aev06g0540 584 SMART LRR_CC_2 430 453 IPR006553 -
Aev06g0540 584 SMART LRR_CC_2 479 503 IPR006553 -
Aev06g0540 584 SMART LRR_CC_2 370 394 IPR006553 -
Aev06g0540 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Aev06g0540 584 SUPERFAMILY RNI-like 359 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0540 Aev-Chr6 3836244 3838863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0540 K14485 - gmx:100779021 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0540 06 3836244 3838863 Aev02g0564 02 4351847 4354829 PCT