Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0272 ATGGAATCCGCCAACACTATGTTTTCTGCATCACCACCGTTTCCTCCACGAACTCTTGTTTCTTCTTCTTCTTCTTCTCCTTCAGTTGTGATGCTTCATGAACAATCTGCTCCGGTAGTTGCTTCTCGGTCTTCTAGTTTCGCGGCACAGCATTTTCCTACCTCAGTTCTCTTACAAGAGCAGCGTGATGAGTATAGGCCTCTACTGCACATGTATAAGGAAGACAAGACCTCCCAGACAACGTCTAATACAAGGCAGATTGAGATGGACTTAGTTAGCGAAAAGGATGACACTGACAATGCTGAACAGTTAGTGCATAACTTTATGCAGCAGCTGCATCTCCGTTCTCATTTACAGAACATATTGACTTCGTCGCCAATAGGGGAAACTTCTGCTTTTTCAGGTCTGCAGCCTATTACTGTTGATTCAGAAAGGCCTGTTGATGGTCTGCGACTCAATGCAGTTTCCCTTGCTAAGCAAGCTTTGTCTGCCTCACAACAAGCAGCTTCAGTAGCTGAAGAGTTCAAATCAGTCGATGCAGATGATGATCCACTTCCTCTTGGTCTGGCCTCTACAAGTTTGGCTAACTCTTCACTTGGAAAGAATACAATTGTGAGGTCAAAACGGCGTCTTGAAAGAAGATCTAGACAAAGAAAAGTACCAAAGTCAAAGTTTCTGGACGAAGAGAGTTATCTTGGAAGAAAGACAGATGTACAGGGAAGGTTACATACTGAAAAGAAGATTAAGGAAGGGTTTGATCAAAATGACCCCTTGCGCTTGTTCTTGTGGGGTCCTGAAACAAAGCAACTTTTGACCTCTGAAGAGGAGTCTCAGTTGTGTGCTCAGCTACAGGATTTATTGAGATTGGAAGAAGTAAAGACCAGGCTTCAATCTCAGTTTGGACGGGAGCCCACTTTGGCTGAATGGGCTGACGGTGTGGGCATTAGCTGCCATGCCCTGCAGACCCAGCTTCGGTGTGGTTACAGAAGCAGAGAAAAACTGATCCATGCCAATTTACGGATGGTAGTTCATATTGCTAAACATTATCAGGGCCGTGGTCTCAGTCTTCAGGACTTATTGCAGGAGGGAAGTATGGGTCTGATGAAGAGTGTTGAAAGGTTTAAACCCCAAGTTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGACAAACAATAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGTCTACCGGAGAGTTTATACACCCTTTTGGGCAAGGTCCTGGAAGCAAAGAAATCATACATTCAGGAAGGGAATCTTCGCCCCACCAATGAAGAATTAGCAGAAAGGGTAGGAATTACTGTAGAAAAGTTGGACAATTTGTTTTTGGCTGCAAGAATTCCACTTTCAATGCAGCAAACTGTGTGGGCAGACCAAGATACAACTTACCAGGAGATTACTGCAGACACTGCAATTGAGACCCCAGAATTGAGTGTTGAAAAACAGCTCATGAGGAGGCACGTGCACAACCTCCTAAGTGTCTTGACCCCAAAAGAAAGGAGGATAATCAGGCTAAGATTTGGCATCGAAGACGGCCACGAGAAAACTTTGTCAGATATCGGAAAAGTGTTCGGGTTGACTAAGGAGAGGGTCCGGCAGCTGGAGAGCCGAGCATTGAAGAAGCTCAAGCAGTGCCTTGACAGTCAAGGACTCCATGCATATGTAGACTTGATTGTATAG 1713 0.4495 MESANTMFSASPPFPPRTLVSSSSSSPSVVMLHEQSAPVVASRSSSFAAQHFPTSVLLQEQRDEYRPLLHMYKEDKTSQTTSNTRQIEMDLVSEKDDTDNAEQLVHNFMQQLHLRSHLQNILTSSPIGETSAFSGLQPITVDSERPVDGLRLNAVSLAKQALSASQQAASVAEEFKSVDADDDPLPLGLASTSLANSSLGKNTIVRSKRRLERRSRQRKVPKSKFLDEESYLGRKTDVQGRLHTEKKIKEGFDQNDPLRLFLWGPETKQLLTSEEESQLCAQLQDLLRLEEVKTRLQSQFGREPTLAEWADGVGISCHALQTQLRCGYRSREKLIHANLRMVVHIAKHYQGRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFGTYAYWWIRQTIRKAIFLHSRTIRLPESLYTLLGKVLEAKKSYIQEGNLRPTNEELAERVGITVEKLDNLFLAARIPLSMQQTVWADQDTTYQEITADTAIETPELSVEKQLMRRHVHNLLSVLTPKERRIIRLRFGIEDGHEKTLSDIGKVFGLTKERVRQLESRALKKLKQCLDSQGLHAYVDLIV* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0272 570 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 330 557 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 ProSitePatterns Sigma-70 factors family signature 1. 358 371 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 570 - -
Aev06g0272 570 ProSitePatterns Sigma-70 factors family signature 2. 527 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 Gene3D - 484 567 IPR036388 -
Aev06g0272 570 CDD Sigma70_r4 496 554 - -
Aev06g0272 570 Pfam Sigma-70, region 4 502 555 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 570 - -
Aev06g0272 570 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 407 480 IPR013324 -
Aev06g0272 570 Pfam Sigma-70 region 2 334 398 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 467 566 IPR013324 -
Aev06g0272 570 Pfam Sigma-70 region 3 415 488 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 MobiDBLite consensus disorder prediction 1 24 - -
Aev06g0272 570 Gene3D - 407 483 IPR036388 -
Aev06g0272 570 Gene3D - 197 403 - -
Aev06g0272 570 PIRSF Sigma_factor_SigC 3 570 IPR016262 -
Aev06g0272 570 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 254 404 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PRINTS Major sigma-70 factor signature 382 390 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PRINTS Major sigma-70 factor signature 542 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PRINTS Major sigma-70 factor signature 358 371 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PRINTS Major sigma-70 factor signature 506 518 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev06g0272 570 PRINTS Major sigma-70 factor signature 527 542 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0272 Aev-Chr6 2027054 2030676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0272 - - aip:107648612 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0272 06 2027054 2030676 Aev06g0272 06 2027054 2030676 ECH
Aev06g0272 06 2027054 2030676 Aev02g2289 02 23800656 23804395 PCT