Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2289 ATGGAATCTGTAACCAGCATGTTTTGTTCTTCTTCACCCTTTCCACCAAGAACTCACCACTTGAACACTCTTCCTTCATCTACTTCACCTTCTTCAGTTTTGGTGTTTCGCGAACAAGCCGCCCCTGCGGTTGCCTCGCGGTCTTCTAGTGTTTCAGTGCAGCATTTTCCTGCCTCGGTTCTTTTACAAGAGCAGCGCGATGAGTACAGGCCTCTACTGCAAATGTATAAGGAAGAAAAGACATCACAGATGGATATGGCCCCGGTTCATGAAGAGAATAACACTGGCAATGCTGATCAGTTAGTGCATGACTTTAGGAAGCTATTGCACAGCTGGTCTCATTTACAGAACTTATTGGTTTCCTCAGAAACAGGAGAAACTGTTGCGTCTTCGACTATAGAGCATGTTTCTGTTAACTCGGCGAAGCCCGCAGATGGCGTGCAATGTAATGCAGTTTCTCTTGCTAAGAAAGCTTTGTCAGCCTCTAAACAAGCAGCATCAGTAGCTGAAGACTTGAAATCACTTAAAGCTGATGATGATGAATCTCTTCCTTTTGGTCTGGCCTCAACTAGTTTGGTTGATCCTTCAACTCGAAGCAGTAAAACCGTGAGGTCAACACGGCTTCTAGAGAGACGATCTAAACAAAGAAAGGCACCAAAGTCTAGAGCTATAGACGACGAAACTTACCTCGCAAGAAAGGATTCACAGCGAAGGCCACGTGTAGAGAAGAAGATAAATGAAGAACTTGATCAAAATGACGCCCTGCGAATGTTCTTGTGGGGTCCTGAAACAAAACAACTTTTGACGCTTGAAGAAGAATCTGAATTGATTGCTCAAATACAGGACTTGTTGAGATTGGAAGAAGTGAAGAGCAACCTTCAATCTCAATTTGGAAGGGAACCAACTGTGTCTGAACTGGCTGAAGGCGTAGGACTTAGCTGCCGAGCTCTGCAGGTGCAAATTCATTGTGGTAACAGGAGCAGGCAAAAGCTGATTCAGGCTAATTTACGCATGGTAGTTCACGTCGCGAAAAATTATCTAGGGCGTGGTCTCAGCCTCCAGGACTTATTACAGGAGGGAAGTATGGGTCTAATGAAGAGTGTTGAGAAGTTTAAGCCCCAAGTTGGTTGCCGGTTCGGTACTTATGCATACTGGTGGATTAGGCAATCGATCCGGAAAGCCATATTTAAGCATTCTAGGACAATCCGGCTGCCGGAAAATGTGTACATCCTTTTGGGAAAGATAGCAGAGGCGAAGAAATTATACATTCAAGAAGGGAATCTAGACCCGACAAAGGAAGAATTGGCAACAAGGGTAGGGATTACTGAAGAGAAGATTGACCATTTGCTATTTGTTGCAAGAAATCCAGTTTCTTTGCAGCAAGTTGTTTGGACAGACCAAGCTACAACTTACCAGGAAATTACAGCAGACACTGCAATTGAGACCCCTGAAGTAACTGTTGAGAAACAACTGATGCGACGGCATGTACACAACCTTCTACGTATCTTACGGCCCAAGGAAAGGAAGATCATCCGGCTAAGATTTGGTATGGAGGATGGCCAACAGAGATCTTTATCAGAAGTTGGAGAAATTTTTGGTTTGTCTAAGGAAAGGGTTCGCCAACTGGAGAGTCGAGCATTGTACAAGCTCAAGCAGAGCCTTGTCAGTCAAGGACACGATGTTTATTCGGACTTGCTTGTATAG 1704 0.4454 MESVTSMFCSSSPFPPRTHHLNTLPSSTSPSSVLVFREQAAPAVASRSSSVSVQHFPASVLLQEQRDEYRPLLQMYKEEKTSQMDMAPVHEENNTGNADQLVHDFRKLLHSWSHLQNLLVSSETGETVASSTIEHVSVNSAKPADGVQCNAVSLAKKALSASKQAASVAEDLKSLKADDDESLPFGLASTSLVDPSTRSSKTVRSTRLLERRSKQRKAPKSRAIDDETYLARKDSQRRPRVEKKINEELDQNDALRMFLWGPETKQLLTLEEESELIAQIQDLLRLEEVKSNLQSQFGREPTVSELAEGVGLSCRALQVQIHCGNRSRQKLIQANLRMVVHVAKNYLGRGLSLQDLLQEGSMGLMKSVEKFKPQVGCRFGTYAYWWIRQSIRKAIFKHSRTIRLPENVYILLGKIAEAKKLYIQEGNLDPTKEELATRVGITEEKIDHLLFVARNPVSLQQVVWTDQATTYQEITADTAIETPEVTVEKQLMRRHVHNLLRILRPKERKIIRLRFGMEDGQQRSLSEVGEIFGLSKERVRQLESRALYKLKQSLVSQGHDVYSDLLV* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2289 567 MobiDBLite consensus disorder prediction 186 225 - -
Aev02g2289 567 Gene3D - 404 481 IPR036388 -
Aev02g2289 567 Pfam Sigma-70, region 4 500 552 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 567 - -
Aev02g2289 567 PRINTS Major sigma-70 factor signature 524 539 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 PRINTS Major sigma-70 factor signature 355 368 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 PRINTS Major sigma-70 factor signature 539 550 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 PRINTS Major sigma-70 factor signature 379 387 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 PRINTS Major sigma-70 factor signature 503 515 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 465 562 IPR013324 -
Aev02g2289 567 PIRSF Sigma_factor_SigC 1 567 IPR016262 -
Aev02g2289 567 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 404 477 IPR013324 -
Aev02g2289 567 CDD Sigma70_r4 493 551 - -
Aev02g2289 567 Pfam Sigma-70 region 2 331 400 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 Gene3D - 61 400 - -
Aev02g2289 567 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 327 554 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 567 - -
Aev02g2289 567 Pfam Sigma-70 region 3 412 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 Gene3D - 482 556 IPR036388 -
Aev02g2289 567 ProSitePatterns Sigma-70 factors family signature 1. 355 368 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 ProSitePatterns Sigma-70 factors family signature 2. 524 550 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 MobiDBLite consensus disorder prediction 189 203 - -
Aev02g2289 567 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 251 401 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aev02g2289 567 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2289 Aev-Chr2 23800656 23804395 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2289 - - gmx:100778636 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g2289 02 23800656 23804395 Aev02g2289 02 23800656 23804395 ECH
Aev06g0272 06 2027054 2030676 Aev02g2289 02 23800656 23804395 PCT