Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3080 ATGTCGGGGTTACTAAACTCTTCTCTGAATGGATCTGCTTCGAATCTTCCAGATGGTTCTGGGAGGTCTTTTGCGACATCGTTCTCTGGTCAGTCTGGTGCAGCCTCCCCTGGCTTCCATCATACTGGAGGTATCCAAGGTTTGCACAATATTCATGGGAGCTTTAATGTCCCCAACATGCCTGGCACGCTCACGTCAAGAAACTCAACAATAAATAGCGTTCAATCTGGTGGTGTTCAACAACCAACGGGAAACCTTTCTAGTGGAAGATTTGGTTCCAACAATCTCCCTGTTGCATTGTCTCAGCTATCTCATGGCGGCACCCATGGACACTCAGGAGTCACCAACAGAGGAGGTATAAGTGTTGTTGGAAACCCTGGATTCAGTAGTAGCACAAATGGAGTTGGTGGTTCTATTCCTGGGATTCTTCCAACATCTGCTGCAATTGGTAATCGAAATGCTGTTCCAGGATTGGGAGTATCCCAAATTTTGGGAAATGCTGGTCCTCGAATCACAAGTTCGGTGGGGAACATGGTTGGAGGGGGGAATCTCGGAAGGACTGGCGGCGGATTGTCTGTGCCTGGTCTTGCTTCTCGTCATTTGAGTGCAAACAGTGGATCTGGTGGTTTAAGCGTGCAAGGACAGAATCGACTAATGAGTGGCGTGCTTCCACAAGGATCTCCGCAGGTAATGTCGATGCTTGGAAATTCTTATCCTAGTGCTGGAGGTCCGCTTTCCCAAAGCCATGTTCAAGCAGTTAATACCTTGAACTCTATGGGGATGTTGAATGATGTGAATTCCAATGACAGTTCTCCTTTTGACATTAATGACTTCCCTCAATTGACAAGTCGGCCAAGTTCTGCTGGAGGGCCTCAAGGACAATTGGGTTCTTTACGAAAACAGGGTCTTGGCGTAAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTCCATGACAATGCTGTGCCAATGATGCAGTCTCAGCATTTTCCAATGGGGAGGTCTGCTGGTTTTAGCTTGGGTGGAACATATTCATCACATCGTTCACAACAGCAGCAACAACATGCTCCTTCAGTCAGTAGCGGCGGTGTCTCTTTTTCATCTGTAAACAACCAGGATCTTCTTCATCTACATGGGTCTGATATTTTTCCGTCTTCACATTCAGCCTATCATTCACAGGCAAGTGCACCTCCTGGGATTGGATTAAGGCCTTTGAATTCTCCAAATACAGTTTCTGGTATGGGTTCATACGACCAGCTCATCCAGCAATATCAACAGCACCAAAACCAGAGCCAGTTCCGGCTTCAAATGTCAGCTGTAAATCAGTCTTTTAGGGATCAGGGCATGAAGGCTATGCAAAGTGCACAATCTACACCAGATCCATTTGGTTTGCTTGGCTTGCTAAGCGTAATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTTGGGTTAAATTTGAATTCATCAGAAAATCTTCACAGGACGTTTGGGTCTCCATGGTCTGATGAACCTGCTAAGGGTGATCCAGAGTTTAGTGTGCCACAATGTTATTATGCAAAACAACCACCTGCTTTGCATCAAGGCTACTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAAGACGAAGCACAATTATATGCTGCAAATGAGCTGTACAATAGAGGTTGGTTTTATCACAAAGAGCATCGGTTTTGGTTTATAAGAGTGCCCAACATGGAGCCGCTTGTTAAAACAAACACATATGAGAGAGGATCTTATCACTGTTTCGATCCAAGCACATTTGAAACGGTTCGCAAGGATAACTTTGTTCTACATTATGAAATGTTGGAAAAGAGACCACCTCTGCCTCAACATTGA 1986 0.4461 MSGLLNSSLNGSASNLPDGSGRSFATSFSGQSGAASPGFHHTGGIQGLHNIHGSFNVPNMPGTLTSRNSTINSVQSGGVQQPTGNLSSGRFGSNNLPVALSQLSHGGTHGHSGVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSAAIGNRNAVPGLGVSQILGNAGPRITSSVGNMVGGGNLGRTGGGLSVPGLASRHLSANSGSGGLSVQGQNRLMSGVLPQGSPQVMSMLGNSYPSAGGPLSQSHVQAVNTLNSMGMLNDVNSNDSSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFPMGRSAGFSLGGTYSSHRSQQQQQHAPSVSSGGVSFSSVNNQDLLHLHGSDIFPSSHSAYHSQASAPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKAMQSAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHRTFGSPWSDEPAKGDPEFSVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRFWFIRVPNMEPLVKTNTYERGSYHCFDPSTFETVRKDNFVLHYEMLEKRPPLPQH* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3080 661 Pfam NOT2 / NOT3 / NOT5 family 530 652 IPR007282 GO:0006355
Aev04g3080 661 MobiDBLite consensus disorder prediction 416 442 - -
Aev04g3080 661 MobiDBLite consensus disorder prediction 24 45 - -
Aev04g3080 661 MobiDBLite consensus disorder prediction 261 294 - -
Aev04g3080 661 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 661 - -
Aev04g3080 661 MobiDBLite consensus disorder prediction 261 299 - -
Aev04g3080 661 MobiDBLite consensus disorder prediction 367 393 - -
Aev04g3080 661 MobiDBLite consensus disorder prediction 363 393 - -
Aev04g3080 661 Gene3D - 480 661 IPR038635 -
Aev04g3080 661 PANTHER CCR4 NOT-RELATED 2 661 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3080 Aev-Chr4 30553407 30558314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3080 K12605 - gmx:100807026 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3080 04 30553407 30558314 Aev04g3080 04 30553407 30558314 ECH
Aev10g1855 10 20167090 20171408 Aev04g3080 04 30553407 30558314 PCT