Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1142 ATGAATACCATTTTGACATTAAGCTTTATTAGTACTATAGCTATATTTTATATAGTTACTTCTGAAACTGGCATGGCACATGCAAGAGTTTCAACAGCTTTAGCTCCAGAGCCTCTTGCTGATTCACCTACCTCAGATTATGATTACATTATTGCTCCTACTGACGATAGCCCTGCGAATGACTCGGCCGAATCGCCTGAACCGGAAGATATCCCGGATTATGAAGAATATGAGGCAGAAGCAATGCCATCAAGATTTTATGATGTAACTCATTATGGAGCTGTGGCTGATGGAAAGACAGATAGTAGCTCTGCATTCTTAGCAGCATGGAAGGATGCATGCTCAAATAAAGGACACTCAACATTCTATGTCCCAAAAGGGACATTCTACCTTGGTCCAGTCTCATTTTCAGGGCCATGCCATAATAATAATAATAAAGGGTCCCCAAAGATATTGATAGTGGGAACATTAAGGGCTCCAAAAAGCCTTAGTGACTTCCCTTCCCCTGAGTGGATTGAATTCAGAAACCTGAATGGTCTCAATCTCACTGGACACAATCACAATGCAATCTTGGATGCTGAGGGTCAAGAATCATGGTCAAAAGCTGGATGCCGGAGGGTCTTGAAATGTCACAATTTCCCAACAGCATTGAAATTGGTGAATGTTTCACATGGCACAGTGAAAAACATTTCTCTGCTGAACAGTAAGGCCTTTCATGTTGGAGTCCACAACTGTGACAACCTTGAATTCTCCAATGTGAACATTCAAGCACCTGGGAATAGCCCAAACACTGATGGAATACACATTGGTCTCTCCAATAACATCAGCATCACTTCCTCAACAATTGGAGTTGGTGATGACTGTGTCTCCATTGGACCTGGCAGCACTAACATCTCTGTCTCATTTGTGCACTGTGGTCCTGGCCATGGAATCAGTGTGGGAAGCCTAGGCAAGGATCCAAATGAGAAGGAGGTGGTTGGGGTTTATGTTTCAAACTGCACAATCAACGGTACCCAAAATGGTGTCAGAATCAAAACTTGGCCTGGTGCACCACCTAATCGTGCTTCTGATTTGGTATTTGAGGACATTAAAATGATCAATGTCTCAAACCCCATTATCATTGACCAAGTATATTGCCCTTCAAACACTTGCAAAACTAAAAAGCCATCACTAGTGAAGATTAGTGATGTGAGATTCAAGAACATTAGTGGCACTTATGACTCAAAGATTGCAGTGACTCTCAAGTGCAGCACTGCAGTGCCTTGTGAGAATGTGCATGTGATTGATGTTCATCTCAATCACACTGATCCAGCAAATAATAACAAGCAAGGTCGTTTCATTGCAAAGGGTGGCCTTCATGATTTTAAAGTTCTTCATTCTCGGTTCTGA 1389 0.4219 MNTILTLSFISTIAIFYIVTSETGMAHARVSTALAPEPLADSPTSDYDYIIAPTDDSPANDSAESPEPEDIPDYEEYEAEAMPSRFYDVTHYGAVADGKTDSSSAFLAAWKDACSNKGHSTFYVPKGTFYLGPVSFSGPCHNNNNKGSPKILIVGTLRAPKSLSDFPSPEWIEFRNLNGLNLTGHNHNAILDAEGQESWSKAGCRRVLKCHNFPTALKLVNVSHGTVKNISLLNSKAFHVGVHNCDNLEFSNVNIQAPGNSPNTDGIHIGLSNNISITSSTIGVGDDCVSIGPGSTNISVSFVHCGPGHGISVGSLGKDPNEKEVVGVYVSNCTINGTQNGVRIKTWPGAPPNRASDLVFEDIKMINVSNPIIIDQVYCPSNTCKTKKPSLVKISDVRFKNISGTYDSKIAVTLKCSTAVPCENVHVIDVHLNHTDPANNNKQGRFIAKGGLHDFKVLHSRF* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1142 462 Gene3D - 76 450 IPR012334 -
Aev04g1142 462 PANTHER EXOPOLYGALACTURONASE-LIKE 69 434 - -
Aev04g1142 462 MobiDBLite consensus disorder prediction 45 70 - -
Aev04g1142 462 SUPERFAMILY Pectin lyase-like 83 436 IPR011050 -
Aev04g1142 462 PANTHER - 69 434 - -
Aev04g1142 462 SMART pbh1 355 376 IPR006626 -
Aev04g1142 462 SMART pbh1 325 346 IPR006626 -
Aev04g1142 462 SMART pbh1 272 293 IPR006626 -
Aev04g1142 462 SMART pbh1 245 271 IPR006626 -
Aev04g1142 462 Pfam Glycosyl hydrolases family 28 114 436 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1142 Aev-Chr4 7257888 7260673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1142 86 443 Glycoside Hydrolase AT4G18180 44.321 2.00e-100 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1142 K01213 - cit:102614588 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2925 01 31223943 31226618 Aev04g1142 04 7257888 7260673 PCT