Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2925 ATGAAGGCTCAAGCAGATGCTGCTAAGACTGGGCTGAAAAAACAGAAGTTCTATGGATCACAGCCCAGTTTTGGGAACATAGAGTTCAAAAATCTATGTCAGTACAAATTCTATCCGACTTACTTGACTTCTGAGCAGGCAGAGACAATAATGGCCATTGCAAGAAGTACCATTATTGTTGCTATCTGCATTGCATTGGCCTATTATGTAGATGCCGCGGGCAGAGTGAGACCAGTGGCTGGTCCTGATATCTACAAGGGCCAAAATGTGGCTCATGATGTCCTGCTTCCTGGGGAGAAAATCAACGATGTCACGCGCTTTGGAGCCAAACCTGATGGCAAGTCCGACTCCACTCAGGCTTTCATGGATGCATGGCAAGCTACCTGCAAATCGAAAGAGCAGAGTAGACTTTATGTACCTGTTGGGAGGTTCCTGGTTTCTTCAATAATCTTTCAAGGGCCATGCCTTGCTCCTAATCCCGTGGCATTCCAAGTGGATGGGACTGTTCTGGCTACCCCGGATATCTCCGACTATGAAAACGGTGACTGGCTCATGTTCCAGAACCTCAATGGCATCAAAGTCATTGGCAATGGTGTCTTTGATGGCCAAGGCAAAGACTCCTGGGCCTTCACCGAGAATTGCGAAGGACAAGCCGATGGTACTGCATGCGTCAGAAATCCTAGCAGCCTGTTCTTCAGCCGCGTGAACAATGGATTAATACAGGGCATTCGATCGGTGAATTCGAAAGGGTTTCACATATTTGTTACAAACAGCGCAAACTTCAGGCTAAGGAAGCTGAAGCTGGTAGCCCCAGCGACAAGCCCAAACACGGACGGGATTCATCTAAGCCACACCATCAATGTGATCATTTCAAAGAACACCATAGCCACAGGGGATGACTGCATCTCCATGATCCAGGGAGTTGCCAATGTGAGCATCAACAATCTCAAGTGCGGGCCTGGCCACGGCATAAGCATTGGGAGCCTGGGGAAGTACCAGGATGAGCTCGAGGTCAGAGGCATTCGGGTCAAGAACGCCACGCTGGTGGGCACCACCAATGGGCTCAGGCTCAAGACATGGCCCGAAAGGTATGGCGGCTCAGCCTCCGAGATTTTCTTCAGTGACATCCAGATGGACAATGTTAAAAATCCTATCATCATCGACCAGGAGTATGAATGCGACCCAGGCAACTGCAAGAAGAAGCCATCGCTTGTGAAGATAAGGGATGTTCATTTTTCAAACATAAAGGGAACGACAATATCAGCCATAGCAGTGGACTTGAGGTGCAGCGCCTTGAACCCATGTCAAGATGTAACGCTTAACAACATTGAACTCAAGCATGCATCGCTTCCTACAACCTCCAGATGTTTAAATACTAAACCTTTATTTGGTGGCATCAACACGCCATCCGCCTGCCTATAA 1422 0.4845 MKAQADAAKTGLKKQKFYGSQPSFGNIEFKNLCQYKFYPTYLTSEQAETIMAIARSTIIVAICIALAYYVDAAGRVRPVAGPDIYKGQNVAHDVLLPGEKINDVTRFGAKPDGKSDSTQAFMDAWQATCKSKEQSRLYVPVGRFLVSSIIFQGPCLAPNPVAFQVDGTVLATPDISDYENGDWLMFQNLNGIKVIGNGVFDGQGKDSWAFTENCEGQADGTACVRNPSSLFFSRVNNGLIQGIRSVNSKGFHIFVTNSANFRLRKLKLVAPATSPNTDGIHLSHTINVIISKNTIATGDDCISMIQGVANVSINNLKCGPGHGISIGSLGKYQDELEVRGIRVKNATLVGTTNGLRLKTWPERYGGSASEIFFSDIQMDNVKNPIIIDQEYECDPGNCKKKPSLVKIRDVHFSNIKGTTISAIAVDLRCSALNPCQDVTLNNIELKHASLPTTSRCLNTKPLFGGINTPSACL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2925 473 PANTHER - 52 472 - -
Aev01g2925 473 Pfam Glycosyl hydrolases family 28 129 460 IPR000743 GO:0004650|GO:0005975
Aev01g2925 473 PANTHER POLYGALACTURONASE 52 472 - -
Aev01g2925 473 Gene3D - 96 467 IPR012334 -
Aev01g2925 473 SUPERFAMILY Pectin lyase-like 97 473 IPR011050 -
Aev01g2925 473 ProSitePatterns Polygalacturonase active site. 315 328 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2925 Aev-Chr1 31223943 31226618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2925 103 472 Glycoside Hydrolase AT4G18180 41.344 1.30e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2925 K01213 - gmx:106796220 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2925 01 31223943 31226618 Aev01g2925 01 31223943 31226618 ECH
Aev01g2925 01 31223943 31226618 Aev04g1142 04 7257888 7260673 PCT