Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0544 ATGGCTTCAGAGAGTGTTGTTGAGTCTTCGGATTTGCCAGTTAAGAGGCAACGAGATGAAGAGGAAAATGGGGTCTCTGTTTCCACTGTATCATCAATGGAAATGGATTCTAATGGCAATGGTAATGGAATATCATCTGTCATTCCTGGCTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAAGCACACTCCTTGAAGATAGAAAAAGTCTTGTTTCAAGGAAAATCTGAATACCAGAATATCATGGTGTTCCAGTCATCAACATATGGAAAAGTTCTTGTTTTGGATGGAGCCATTCAGCTCACAGAAAGGGACGAATGCGCGTACCAGGAAATGATCACTCATCTTCCTCTTTGCTCCATTCCAAATCCTAAAAAGGTTTTAGTTATTGGTGGTGGAGATGGAGGGGTCCTGCGAGAAGTATCGCGCCATTCTTCGGTTGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTGTTGATGTCTCAAAACAATTTTTCCCTGATGTAGCAGTAGGGTATGATGATCCTCGTGTGGCACTTCATATTGGTGATGGAGTTGCATTTTTGAAGAAAGCTCCACAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATTGGCCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTTGAGTCGGTCGCAAAGGCTCTTCGACCAGGAGGAGTTATATGTACTCAGGCAGAAAGTATATGGCTTCATATGGATATAATTGAGAACATTGTGACCAATTGTCGCCAGACTTTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATATCCAAGTGGAATGATTGGTTTTATGCTATGCTCAACTGAGGGGCCTGCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAGAAAGAGATTCAAAAATCAGAAAGACCATTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCTTTTGCTATGAGGAAGATTGGTGCTAAAGCAAATTGA 1020 0.4147 MASESVVESSDLPVKRQRDEEENGVSVSTVSSMEMDSNGNGNGISSVIPGWFSEISPMWPGEAHSLKIEKVLFQGKSEYQNIMVFQSSTYGKVLVLDGAIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGYDDPRVALHIGDGVAFLKKAPQGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVICTQAESIWLHMDIIENIVTNCRQTFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNPIDEKEIQKSERPLKFYNSEIHTAAFCLPSFAMRKIGAKAN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0544 339 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Aev03g0544 339 CDD AdoMet_MTases 127 238 - -
Aev03g0544 339 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 339 IPR001045 GO:0003824
Aev03g0544 339 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Aev03g0544 339 Pfam Spermine/spermidine synthase domain 107 294 - -
Aev03g0544 339 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Aev03g0544 339 PANTHER SPERMIDINE SYNTHASE-RELATED 1 339 - -
Aev03g0544 339 Gene3D Vaccinia Virus protein VP39 102 339 IPR029063 -
Aev03g0544 339 MobiDBLite consensus disorder prediction 1 41 - -
Aev03g0544 339 Hamap Polyamine aminopropyltransferase [speE]. 50 335 IPR001045 GO:0003824
Aev03g0544 339 Gene3D Spermidine synthase, tetramerisation domain 43 101 IPR037163 -
Aev03g0544 339 MobiDBLite consensus disorder prediction 24 41 - -
Aev03g0544 339 PIRSF Spermidine_synth 40 339 IPR030668 GO:0006595
Aev03g0544 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 334 IPR029063 -
Aev03g0544 339 TIGRFAM speE: spermidine synthase 51 329 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0544 Aev-Chr3 3980361 3983253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0544 K00797 - gmx:100812978 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0544 03 3980361 3983253 Aev03g0544 03 3980361 3983253 ECH
Aev05g1286 05 9052777 9055933 Aev03g0544 03 3980361 3983253 PCT