LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g2882	ATGCTTGATCGAATTTGCAACAACATTCTGTACCCTAAGGAATACAAGCAGCAAAAGATTCTCCTCTTCGCTTGCCGCACCTGCGATCACCAGGAAGTTGCTGATAACAACTGTATCTATAGAAATGAGATACATCATTCTGCAAAGGAGCAAACTCAAGTGTTGCAGGATGTAGCTTCAGACCCAACACTTCCTCGGACCAAGTCTGTTCGTTGTTCTCAATGCAATCATGGAGAAGCTGTCTATTTCCAGGAAACGGGCAGAGGGGAAGATGGTATGTCACTCCTTTATGTTTGCTGCAATCCAAACTGTGGGAACCGATGGAGAGATCAAGACTCATAA	342	0.4444	MLDRICNNILYPKEYKQQKILLFACRTCDHQEVADNNCIYRNEIHHSAKEQTQVLQDVASDPTLPRTKSVRCSQCNHGEAVYFQETGRGEDGMSLLYVCCNPNCGNRWRDQDS*	114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g2882	113	Pfam	RNA polymerases M/15 Kd subunit	6	32	IPR001529	GO:0006351
	Aev01g2882	113	Pfam	Transcription factor S-II (TFIIS)	71	109	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Aev01g2882	113	Gene3D	-	43	110	-	-
	Aev01g2882	113	PANTHER	DNA-DIRECTED RNA POLYMERASE	4	110	IPR012164	GO:0006351
	Aev01g2882	113	SMART	rpol9cneu	6	54	IPR001529	GO:0006351
	Aev01g2882	113	CDD	Zn-ribbon_RPB9	60	109	IPR034012	GO:0006379
	Aev01g2882	113	SUPERFAMILY	Zinc beta-ribbon	6	44	-	-
	Aev01g2882	113	SMART	Cys4_2	70	110	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Aev01g2882	113	ProSiteProfiles	Zinc finger TFIIS-type profile.	68	109	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Aev01g2882	113	PANTHER	DNA-DIRECTED RNA POLYMERASE SUBUNIT	4	110	-	-
	Aev01g2882	113	Gene3D	-	4	42	-	-
	Aev01g2882	113	SUPERFAMILY	Zinc beta-ribbon	47	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g2882	Aev-Chr1	31007347	31008091	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g2882	K03017		-	nnu:104605091	202.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev01g2882	01	31007347	31008091	Aev01g2882	01	31007347	31008091	ECH
	Aev01g2882	01	31007347	31008091	Aev04g1089	04	6826387	6828313	PCT