LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g2663	ATGCATCTCACTCTTCACCAAATACTCTCCCCTCTTGGCTTCTTTTGTCCCCCTCTCCTTTTTCTCTCTATTCTTCAACTGCTTCCTATTTCCCAACCAAGTCCACTAAAACCAAAACCACAACATACATATACATTATTTATCATGAAAATGGGGAGTAAGGTACTGAATTGTTGTGTTGTCCTAATAATTATTATAGGCTTTGTGGTGGCAGCATCAGCAGGTGACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCTAAAATCCTTAACAATGGACAGCTTCTAACTCTGTCTCTAGACAAGCCCTCTGGCTCTGGCTTCCGTTCCAAGAATGAGTACTTGTTTGGAAAAATTGACATGCAGCTAAAGCTTGTGCCTGGCAACTCTGCAGGAACTGTCACAGCCTATTATCTTTCTTCACTTGGTGATACTCATGATGAAATAGACTTTGAATTTCTGGGAAACTTGAGTGGTGATCCTTATATCCTCCACACCAATGTGTTCACACAAGGAAAAGGAAACAGAGAACAGCAATTCTATCTGTGGTTCGATCCCACCAAGGACTTCCACACTTATTCCCTTCTCTGGAATCCTCAGAGCATCATATTCTCTGTGGACGGCACACCAATAAGGGAATTCAAGAACTTGGAATCAAAGGGCGTAGCTTTCCCTAAGAAGCAAGCGATGAGGATATACTCGAGCCTGTGGAATGCAGATGATTGGGCCACAAGGGGTGGTCTTGTGAAGACAGATTGGAGCCAGGCACCATTCACAGCCTCATACAGAAACTTCAATGCACAAGCCTGTGTTTGGACTTCTTCAGGCTCATCTTGTTCCACCACTTCTCAAGAAGACCAATCATGGCTGACCCAATCACTTGATTCTACAGGGCAAGCTAGGATTCAGTGGGTGCAGAAGAACTATATGATTTACAATTACTGCACTGATACCAAGCGTTTCCCACAGGGGCTCCCTCCTGAATGCACAATCGCATGA	1008	0.4415	MHLTLHQILSPLGFFCPPLLFLSILQLLPISQPSPLKPKPQHTYTLFIMKMGSKVLNCCVVLIIIIGFVVAASAGDFNQDFEITWGDGRAKILNNGQLLTLSLDKPSGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSLLWNPQSIIFSVDGTPIREFKNLESKGVAFPKKQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVWTSSGSSCSTTSQEDQSWLTQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIA*	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g2663	335	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	289	332	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Aev01g2663	335	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	151	161	IPR008263	GO:0004553\|GO:0005975
	Aev01g2663	335	CDD	GH16_XET	72	332	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aev01g2663	335	PRINTS	Glycosyl hydrolase family 16 signature	167	180	IPR008264	GO:0004553\|GO:0005975
	Aev01g2663	335	PRINTS	Glycosyl hydrolase family 16 signature	185	202	IPR008264	GO:0004553\|GO:0005975
	Aev01g2663	335	PRINTS	Glycosyl hydrolase family 16 signature	109	127	IPR008264	GO:0004553\|GO:0005975
	Aev01g2663	335	Pfam	Glycosyl hydrolases family 16	78	257	IPR000757	GO:0004553\|GO:0005975
	Aev01g2663	335	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	71	265	IPR000757	GO:0004553\|GO:0005975
	Aev01g2663	335	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	55	334	IPR044791	GO:0004553
	Aev01g2663	335	SUPERFAMILY	Concanavalin A-like lectins/glucanases	76	334	IPR013320	-
	Aev01g2663	335	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	55	334	-	-
	Aev01g2663	335	PIRSF	EndGlu_transf	41	335	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aev01g2663	335	Gene3D	-	63	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g2663	Aev-Chr1	29589728	29591027	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev01g2663	60	335	Glycoside Hydrolase	AT4G25810	73.381	7.58e-155	434

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g2663	K14504		-	gmx:100807063	517.694

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev01g2663	01	29589728	29591027	Aev04g1358	04	9366988	9368350	PCT