Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2052 ATGGATTACTCCAACCATAACCACAACCACCATCAAACACCTCAAAATTACTCTCTAACCTCACAAAGCAGCCTCGCATCAGTACCATCCCTAAACTCACACAACAATATTAACATTTCTTCTTATTCTTCTTCCTCCACTACTTCACATAACTACTACTGCCTCACAACGCTCAAAAACACTTCCTACACATCCTCCTTAACCGTCTCCGGCAAATTCCTCTACACCGGCTCATCCGACAGAGAAATCACCGCCTGGAGCCGCAACCAAATAACCGCCACAACCACCAACACCATATTCGCCGCCGGAAAGGGTGCCATCAAGTCCCTAGTACTTCATTCCGACAAACTCTTCAGTGCACACCAAGACCACAAAATCCGTGTCTGGAAAATCACAACCGACACTACAACTAAAAACAACCACGACCAACAACAGAAGTACACTCATTTAGCCACACTTCCAACGCTCACGGACCGTATGACAAAGCTCTTAGTCCCAAACAGCCACGTCCGAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACCGTCTCGTCCCTTGCCTTGTCCAAGGACGGAACCTTGTTGTACTCAGTTTCATGGGACAGGACAATCAAGGTTTGGCGAACCAAGGACTTCGCGTGTTTGGAGTCTGTAACCAACGCTCATGATGACGCCATAAACGCGGTCGCAGTCTCAGACGACGGCCGCGTTTACACCGGATCAGCCGACAAAAGAATCAAGGTATGGCAGAAAAACAAAAAACACTACCTTGTAGAAACCTTAGAGAAGCACAATTCTGGGATCAATGCTTTGGCTCTAAGTGGTGATGGGTCGATATTGTATTCGGGTGCAAGTGATAGATCAATATTGGTTTGGGAGGAGGAGGATGGGAAAATGGTGGTGGTGGGTGCTATAAGAGGGCATAGTAGGTCTATATTGTGTTTGGTTGTGGTGATGGATTGTGTGTGTAGTGGTTCAGAGGATAAAACGGTTCGTGTTTGGAGAGGTGTTTGCAGAGAGTATTCATGTTTGGCTGTTTTGGAAGGGCATACAGGACCAATTAAGAGCTTAACTGCTGTAATTGATCGCTGTGACAATGACACTTCTGAAGCATCGTTACTTGTCTATAGTGGCAGTTTGGACTGCCAGGTTAAGGTTTGGCAGCTTTTTGTTCCTCTTCTCTAA 1197 0.4662 MDYSNHNHNHHQTPQNYSLTSQSSLASVPSLNSHNNINISSYSSSSTTSHNYYCLTTLKNTSYTSSLTVSGKFLYTGSSDREITAWSRNQITATTTNTIFAAGKGAIKSLVLHSDKLFSAHQDHKIRVWKITTDTTTKNNHDQQQKYTHLATLPTLTDRMTKLLVPNSHVRIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWRTKDFACLESVTNAHDDAINAVAVSDDGRVYTGSADKRIKVWQKNKKHYLVETLEKHNSGINALALSGDGSILYSGASDRSILVWEEEDGKMVVVGAIRGHSRSILCLVVVMDCVCSGSEDKTVRVWRGVCREYSCLAVLEGHTGPIKSLTAVIDRCDNDTSEASLLVYSGSLDCQVKVWQLFVPLL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2052 398 Gene3D - 168 258 IPR015943 GO:0005515
Aev01g2052 398 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Aev01g2052 398 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Aev01g2052 398 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 254 IPR001680 GO:0005515
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 211 - -
Aev01g2052 398 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 15 398 - -
Aev01g2052 398 CDD WD40 70 392 - -
Aev01g2052 398 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 398 IPR045182 -
Aev01g2052 398 SUPERFAMILY WD40 repeat-like 64 393 IPR036322 GO:0005515
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Aev01g2052 398 Pfam WD domain, G-beta repeat 181 211 IPR001680 GO:0005515
Aev01g2052 398 Pfam WD domain, G-beta repeat 346 391 IPR001680 GO:0005515
Aev01g2052 398 Pfam WD domain, G-beta repeat 263 296 IPR001680 GO:0005515
Aev01g2052 398 Pfam WD domain, G-beta repeat 219 253 IPR001680 GO:0005515
Aev01g2052 398 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515
Aev01g2052 398 Gene3D - 21 167 IPR015943 GO:0005515
Aev01g2052 398 MobiDBLite consensus disorder prediction 1 21 - -
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 344 392 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 302 339 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 258 297 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 173 212 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 215 254 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 92 130 IPR001680 GO:0005515
Aev01g2052 398 SMART WD40_4 51 87 IPR001680 GO:0005515
Aev01g2052 398 Gene3D - 259 394 IPR015943 GO:0005515
Aev01g2052 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2052 Aev-Chr1 25132189 25133385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2052 207 393 Miscellaneous Gene Families AT5G08390 25.510 7.52e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2052 - - aip:107610034 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2052 01 25132189 25133385 Aev01g2052 01 25132189 25133385 ECH
Aev01g2052 01 25132189 25133385 Aev08g2215 08 21340058 21343372 PCT