Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1981 ATGGGTTTAGAAGATGATAAGAGTGGGGTGTCCCTGCCCGGTGGCCCTGACGGGCAGAAGAGAAGGGTATCGTACTTCTACGAGCCCACAATTGGTGACTACTACTACGGCCAGGGTCACCCTATGAAGCCTCACCGAATCCGCATGGCCCACAACCTCATCGTCCACTACTACCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCCGCCGCACCCGACGATATCCGCCTCTTTCACTCCGACGACTACGTCAGCTTCCTCGCCTCTGTTTCCCCTGACACGCTTGCGGAGCCCTCGTTCAACCGCCACCTCAAGCGCTTCAACGTCGGCGAGGATTGCCCTGTTTTCGACGGCCTTTTCAATTTCTGCCAGGCTTCTGCCGGAGGCTCTATTGGCGCCGCCGTTAAGCTCAACCGCGAGGATGCTGACATCGCCATCAATTGGGCCGGTGGGCTCCACCATGCCAAGAAGGCTGAGGCTTCTGGGTTCTGTTATGTCAACGACATTGTCCTTGGCATCCTGGAACTTCTTAAAGTTCATAGGCGTGTGCTGTATGTGGACATTGATGTTCACCATGGGGATGGTGTTGAGGAGGCCTTTTATACAACTGATAGAGTAATGACAGTGTCATTTCATAAGTTTGGGGACTTTTTCCCTGGTACTGGACACATTAAAGACATCGGGTGGGGCCCAGGAAAGAATTATGCTCTCAATGTCCCATTAAATGATGGAATGGATGATGAGAGTTTCAGGGCTCTGTTTCGACCCATCATTCAAAAGGTCATGGAAGTTTATCAACCTGAGGCTGTTGTTCTTCAATGTGGAGCTGATTCTTTGTCTGGCGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCCTGGGTGGTGGAGGATATACAATTCGGAATGTTGCTCGTTGTTGGTGTTATGAGACAGCGGTGGCGGTAGGAGTGGAACCTGATAATAAGCTGCCTTATAATGAATACTACGAGTATTTTGGCCCAGATTATACTCTTCATGTGGATCCAAGCAACATGGAGAACCTAAACACAGCCAAAGATATGGAAAAGATAAGGAACACTCTGATAGAGCAGATTACGAGGCTTCCCTTTGCTCCCAGTGTTCCTTTTCAGACAACACCGGCAACGATGGAAGTTCCGGAAGAGGAAGAAGAGGACATGGATACAAGACCAAAGCAACGCCTATGGACTGGGAACGACTATGATTCTGATAATGATGAAGATAGAAAGGCTGAGATGAAGCCCTCATTAACTGACCAAATGAGGGATGGTGCTGATGAGATGGATGAAGATAGGCCACCAGTGCCCCCACCATCTGGATGCTGCTAG 1404 0.5 MGLEDDKSGVSLPGGPDGQKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYLHRRMEINRPFPAAPDDIRLFHSDDYVSFLASVSPDTLAEPSFNRHLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNREDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGWGPGKNYALNVPLNDGMDDESFRALFRPIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSNMENLNTAKDMEKIRNTLIEQITRLPFAPSVPFQTTPATMEVPEEEEEDMDTRPKQRLWTGNDYDSDNDEDRKAEMKPSLTDQMRDGADEMDEDRPPVPPPSGCC* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1981 467 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Aev01g1981 467 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Aev01g1981 467 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Aev01g1981 467 Pfam Histone deacetylase domain 40 331 IPR023801 -
Aev01g1981 467 Gene3D Histone deacetylase domain 19 394 IPR037138 -
Aev01g1981 467 MobiDBLite consensus disorder prediction 411 458 - -
Aev01g1981 467 SUPERFAMILY Arginase/deacetylase 21 385 IPR023696 -
Aev01g1981 467 PANTHER HISTONE DEACETYLASE 6 437 - -
Aev01g1981 467 CDD HDAC_classI 26 333 - -
Aev01g1981 467 MobiDBLite consensus disorder prediction 392 467 - -
Aev01g1981 467 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PIRSF HDAC_I_euk 5 460 IPR003084 GO:0004407|GO:0016575
Aev01g1981 467 PANTHER HISTONE DEACETYLASE 6 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1981 Aev-Chr1 24550580 24554275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1981 K06067 - qsu:112035676 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1981 01 24550580 24554275 Aev01g1981 01 24550580 24554275 ECH
Aev01g1981 01 24550580 24554275 Aev08g2291 08 22149625 22152555 PCT