Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1227 ATGGATAAGTTAAGTCAATACAAGCGTGTATTTAATCAATTCGACGAAAATGGAGATGGAAAGATATCATCACTGGAGATGTGGCAGTGCGTGGAGGCCATGGGCGGGGAGCTCTCGGCTGAGGATGCAGAGAAGGCGGTGGCATTGATCGACACAGACGGCGACGGGCTCGTGGGGCTCGACGATTTTGTTAGGTTTGTGGAGGGTGGTGAGGAGGAGGAGAAAGAGAATGGCTTGAAGGAGGCTTTTAAGATGTATGAGATGGATGGGAGTGGTTGCATCACACCTAGGAGTCTTAAGAGGATGCTTAGTAGGTTAGGTGAATCTAGGAGTTTGGATGAGTGTCATGTTATGATAGATAGATTTGATCTTAATAGAGATGGGGTTCTCACTTTCGATGAATTTAAGGTCATGATGTTGTAA 423 0.461 MDKLSQYKRVFNQFDENGDGKISSLEMWQCVEAMGGELSAEDAEKAVALIDTDGDGLVGLDDFVRFVEGGEEEEKENGLKEAFKMYEMDGSGCITPRSLKRMLSRLGESRSLDECHVMIDRFDLNRDGVLTFDEFKVMML 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1227 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Aed9g1227 140 SMART efh_1 6 34 IPR002048 GO:0005509
Aed9g1227 140 SMART efh_1 78 106 IPR002048 GO:0005509
Aed9g1227 140 SMART efh_1 42 70 IPR002048 GO:0005509
Aed9g1227 140 SMART efh_1 114 140 IPR002048 GO:0005509
Aed9g1227 140 CDD EFh 6 67 IPR002048 GO:0005509
Aed9g1227 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Aed9g1227 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Aed9g1227 140 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Aed9g1227 140 Gene3D - 1 68 - -
Aed9g1227 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Aed9g1227 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Aed9g1227 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Aed9g1227 140 CDD EFh 82 139 IPR002048 GO:0005509
Aed9g1227 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Aed9g1227 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Aed9g1227 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Aed9g1227 140 Gene3D - 69 140 - -
Aed9g1227 140 Pfam EF-hand domain pair 91 139 IPR002048 GO:0005509
Aed9g1227 140 SUPERFAMILY EF-hand 4 140 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1227 Aed-Chr9 9586018 9586440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1227 2 139 EF-hand Containing Proteins AT1G76650 50.725 4.38e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1227 K13448 - gmx:100784553 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1227 9 9586018 9586440 Aed9g1227 9 9586018 9586440 ECH
Aed9g1227 9 9586018 9586440 Aed3g1223 3 10762475 10764222 PCT