Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1223 ATGGACAAGTTGCCTCAGTATGTGCGTGTGTTCAACCACTTTGACGAGAACGGTGATGGCACGATATCGCCATCGGAGTTGCGACAATGTGTGGAGGCGATTGGTGGTGAGTTGTTGTTGTCAGAGGCGGAGGCCGTGGTGGAGCTTCTAGACTCGGACAATGATAGGTTGATGAAGTTGGACGATTTTGTGAGGTTTGTAGAGGGAGGGGAAGAGGAAGAGAAAGTGAAAGACCTAAGAGAGGCTTTCAAGATCTATGAAATGGAGGACGGGTGTGGTTGCATCACGCCAAAGAGTCTCAAGAGAATGCTTGGGAAATTGGGAGAGTGCAAGAGCATAGATGACCTTAAAATTGCAAGCATTTCGCTGTTTCCACAGGTTGAAAACCACAACACACCAGATAACACGCCACAAGTTGATCTCCCAAGTACTAGAGCACAGTCCAGTGTGTTGAATAAAATGTAG 465 0.4731 MDKLPQYVRVFNHFDENGDGTISPSELRQCVEAIGGELLLSEAEAVVELLDSDNDRLMKLDDFVRFVEGGEEEEKVKDLREAFKIYEMEDGCGCITPKSLKRMLGKLGECKSIDDLKIASISLFPQVENHNTPDNTPQVDLPSTRAQSSVLNKM 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1223 154 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Aed3g1223 154 SUPERFAMILY EF-hand 4 117 IPR011992 -
Aed3g1223 154 MobiDBLite consensus disorder prediction 128 154 - -
Aed3g1223 154 Pfam EF-hand domain pair 9 67 IPR002048 GO:0005509
Aed3g1223 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 118 - -
Aed3g1223 154 SMART efh_1 6 34 IPR002048 GO:0005509
Aed3g1223 154 SMART efh_1 78 107 IPR002048 GO:0005509
Aed3g1223 154 Gene3D - 2 68 - -
Aed3g1223 154 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Aed3g1223 154 Gene3D - 69 118 - -
Aed3g1223 154 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 118 - -
Aed3g1223 154 CDD EFh 9 66 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1223 Aed-Chr3 10762475 10764222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1223 2 124 EF-hand Containing Proteins AT1G76650 41.463 7.92e-24 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1223 K13448 - qsu:111991949 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1227 9 9586018 9586440 Aed3g1223 3 10762475 10764222 PCT