Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0366 ATGTCTCTCCCCACCAAACGGTCGGGCACCGCTAGTTCCTCCCCGTCGCCGCCACCCCCTATGAAAAAGGCCAAGTCCCTCCTTCTCCGCTCCACCTCTGACGACGCCGTTTTGGACCCTTCCTCCATGCCTCTCGACGACGATCTCCCCAATGCCCGCGCCGCCAATCTCGCCCGCAAAAAAGCCACCCCTCCTCAACCCGCCAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAACCAACACTGCCCACGAATTTTGAGGAGGATACATGGGCAAAACTGAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCTAACTCTTGTGACTTGGAGAAACTTTATCAGGCTGTGAACGATCTCTGCCTTTACAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACATATATCTGCTGCACTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTTCTGTCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACATATGTTAAGCAAACAGCAAATGTCCGGTCATTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCTGAAGTAGAACACAAAACTGTTACAGGTCTTCTACGGATGATTGAAAGTGAAAGAAAAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCACGTGGAGATAAGATTGCAAGAAGAACATGAAAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACGGCAGAAAAGCAACTTCTTGAGCGTCATATACCTGCCATTCTTGATAAGGGCTTTGCAATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGTACTCTCTCTTTTCAAGGGTTAATGCCCTTGAGTCACTGAGGCAGGCCATTAGTTCATACATCAGGAGAACTGGCCAGGGCATTGTTTTGGACGAGGAGAAAGATAAAGATATGGTTTCATGCCTTTTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTTATCAATCTTCGTCAGGGCAAGGATGTGTTTGAGGCATTTTATAAAAAAGATCTTGCAAAAAGACTGCTGTTAGGAAAGAGTGCTTCTATTGACGCAGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGCGGCAGCCAGTTCACAAACAAATTAGAAGGGATGTTTAAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTGCCTCATGAATTGAACGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATATAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTAAAGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCTTATTTCAGACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGTTGCCGAAGGGTAGAGATGTGGATGATGATGACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGTCAGTATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAGGTGCTTAGTCACACGCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCAATAAAACCAGCTGACTTGAAGAAAAGGATTGAAAGCCTGATTGACAGAGAATATCTGGAGAGAGACAAGAACAACCCTCAAATATACAATTACTTGGCATAG 2196 0.4294 MSLPTKRSGTASSSPSPPPPMKKAKSLLLRSTSDDAVLDPSSMPLDDDLPNARAANLARKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERKGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEIRLQEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRIEDLQRMYSLFSRVNALESLRQAISSYIRRTGQGIVLDEEKDKDMVSCLLEFKASLDTTWEESFSKNEAFCNTIKDSFEHLINLRQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVDDDDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0366 731 Gene3D - 658 731 IPR036388 -
Aed9g0366 731 Pfam Cullin protein neddylation domain 663 723 IPR019559 -
Aed9g0366 731 SUPERFAMILY Cullin repeat-like 85 427 IPR016159 -
Aed9g0366 731 Gene3D Cullin; Chain C, Domain 2 490 645 - -
Aed9g0366 731 Pfam Cullin family 91 428 IPR001373 GO:0006511|GO:0031625
Aed9g0366 731 Pfam Cullin family 429 632 IPR001373 GO:0006511|GO:0031625
Aed9g0366 731 SUPERFAMILY "Winged helix" DNA-binding domain 643 731 IPR036390 -
Aed9g0366 731 PANTHER CULLIN 429 731 IPR045093 -
Aed9g0366 731 PANTHER CULLIN 49 427 IPR045093 -
Aed9g0366 731 Gene3D Cullin Repeats 213 326 - -
Aed9g0366 731 SMART Cullin_Nedd8_2 660 725 IPR019559 -
Aed9g0366 731 MobiDBLite consensus disorder prediction 1 26 - -
Aed9g0366 731 Gene3D Cullin Repeats 328 429 - -
Aed9g0366 731 ProSiteProfiles Cullin family profile. 424 604 IPR016158 -
Aed9g0366 731 SMART cul_2 419 554 IPR016158 -
Aed9g0366 731 ProSitePatterns Cullin family signature. 704 731 IPR016157 GO:0006511|GO:0031461|GO:0031625
Aed9g0366 731 PANTHER CULLIN-4A 49 427 - -
Aed9g0366 731 Gene3D Cullin Repeats 78 209 - -
Aed9g0366 731 PANTHER CULLIN-4A 429 731 - -
Aed9g0366 731 SUPERFAMILY Cullin homology domain 411 646 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0366 Aed-Chr9 2525392 2534421 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0366 K10609 - gmx:100805491 1331.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0366 9 2525392 2534421 Aed9g0366 9 2525392 2534421 ECH
Aed9g0366 9 2525392 2534421 Aed6g2395 6 25573337 25580286 PCT