Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1971 AAGAAGCAGCTAAACTTAATCCCCACATTTTATTCTTCTTCCCACTTCAACATCAATGCTCACGCTGCTGCCAATAGTAGCAATGGTGAGCCACCAGAGGATTGGCCTCACGACGCTGCTACGCAATCGCAACTCCTATTAGTGTTAATTTCATTCGGGCCTCTGTGCCCAGTGACGACATCAGCAACACTGGGTGGGTCGGAGGGTCCAATTTGGGCAGTAATCTGCAATGGTCTCGACAAGTTTGTTATTGTGCAGCACAGGGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATCAAAGAATATACCACGGGTTTCTTTCTTTCTTTCTTTCTTTCGCTATCATACTTTATTCTTTTGTGCTATCTGAGGCAGATGCTGGAATCTCCGAAGGATTCGATGATGAGGATGATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGTTCAGGGAAGACTTTACTTGCCAAAACACTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACCCTAACAGTCTTACACAGGCAAGGGAAATGTTCTAATTTGCAGGCTGGTTATGTTGGAGAAGATGTCAAGTCAATATTGTATAAACTACTTTCGGCAGCAGAGTTCAATGTTCAAGCTGCTCAACAAGGGATTGTGTACATTGATGAAGTGGACAAGATAACTAAGAAGATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGCATCCATGGGGTGATAACATACAGGAACTCTTTCATCCCCTTATCAAAATATTCTTTTTAATATGTGGTGGAGCATTTATTGATCTCGAAAAGACTATTTCAGAGAGAATATTTGTTCACAGATGTTCTGCATCTGTCTTGGTTTTGCTTGTTTTTTCATCAAAACGACAAGATTCCTCAATTGGTTTTGGAGCACCAGTCCGTGTCAATATGAGAACTGGTAGAGTTACAAATGCTGTAGTCACATCATCTTTACTTGAGTTGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATAGGTATTATACTCATTAGAAGTGTGTCTGGCATTGAGAAATCTGATGTTTTTCTGGATATGCTGCTTTCATCAGTGTATAAATATATGACTATTGAAATGTTGGTTCTACAGGTCCTCACAGAACCAAAAAATGCTCTTGCTGAGCAGTACAAGAAATTATTTAACATGAATAATGTAAGCAGTTCTTCCTAA 1245 0.4048 KKQLNLIPTFYSSSHFNINAHAAANSSNGEPPEDWPHDAATQSQLLLVLISFGPLCPVTTSATLGGSEGPIWAVICNGLDKFVIVQHRAKKVLSVAVYNHYQRIYHGFLSFFLSFAIILYSFVLSEADAGISEGFDDEDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTVLHRQGKCSNLQAGYVGEDVKSILYKLLSAAEFNVQAAQQGIVYIDEVDKITKKIVNVPEKGARKHPWGDNIQELFHPLIKIFFLICGGAFIDLEKTISERIFVHRCSASVLVLLVFSSKRQDSSIGFGAPVRVNMRTGRVTNAVVTSSLLELVESADLIAYGLIPEFIGIILIRSVSGIEKSDVFLDMLLSSVYKYMTIEMLVLQVLTEPKNALAEQYKKLFNMNNVSSSS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1971 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 290 IPR027417 -
Aed8g1971 414 CDD AAA 145 239 - -
Aed8g1971 414 Pfam AAA domain (Cdc48 subfamily) 144 260 IPR003959 GO:0005524|GO:0016887
Aed8g1971 414 Gene3D - 380 413 - -
Aed8g1971 414 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 236 411 - -
Aed8g1971 414 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 65 236 - -
Aed8g1971 414 Gene3D - 70 359 IPR027417 -
Aed8g1971 414 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 148 166 IPR001270 GO:0005524
Aed8g1971 414 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 226 244 IPR001270 GO:0005524
Aed8g1971 414 SMART AAA_5 144 290 IPR003593 -
Aed8g1971 414 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 236 411 - -
Aed8g1971 414 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 65 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1971 Aed-Chr8 24223148 24227085 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1971 K03544 - gmx:100818418 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1971 8 24223148 24227085 Aed8g1971 8 24223148 24227085 ECH
Aed7g0462 7 3300643 3310050 Aed8g1971 8 24223148 24227085 PCT