Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0462 ATGTCGCGAATCTTCGGTAGATGGAAGAATGCGAAGGAAATGGCGTTGCTTTCGGGGTCCCTGCCACGTGGGCACCATCGAACCGGGTTCATTTTTTGCCCAATTTCGACTCACCTGAACATGGTCGCCGGCCACCGGCGGCGGGAGGCTCCGGTGGGGGTTCAGGAGCGGTACAAGTGGGACCGCGGCGGGTCAGACGACAACTCGTACCGGAAGATCCGGGCCGAGGCTAATTGCCCACGTTGCACCAAAGACATGAACCTTGTTTTCTCCAATCGCCACTTTCCCACACCACCAAGTGAATCTGAATTGGGTGGTGGAGAAAGAGAAAAGGGTTACCAATCGGTGAACCTTTGCCCAACTTGCAAAACTGCTTATTACTTTCGTCCTTATGACACTGTACCTTTGCAGGGTACCTTTGTGGAGATTGGTAGGGTCACTAGTACTAACAATAATGGTGTTAATAATGTAAGTGGCAAGGGACATTCTCCTAGGAGGATCGCACATGGGAAGGGTGGTGGGAAAGATGGTAGTAGTACTAGTAAGGGAGAGGAATTTGTGGGTAAGAGTAATAGTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGACTTACAATGGTGATGCTCGTGGAGGTAATGGTGAGCCACCTGAGTCATGGTTGCCGACACCAGATGGTAGCAATGGAAATGGAAATGGATTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGACTAATGTTATCCGGGCTACGGGGCCAAGGAATGGTGGTTCAGGTGGTGGAGGTGGGGGCAATGACGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGAATTGCCCTCGCCGAAGGAGATCTGTAAGGGTCTTGACAAGTTTGTTATTGGCCAACAGAGAGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAGCCGCAGATTCAGGAGCTTCGGAAGTATTAGATGATGGCGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAAACACTGGCTCGATTGGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCAAGTATGAATTCATTGATGAGGCTGGTTATGTTGGAGAAGACGTCGAATCAATACTGTATAAACTACTTGCGGTATGCAGCAGATTTCAATGTTGTAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCCGAGAGCTTAAATATCAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTGAGCTAGGAAGCATCCACGGGGGGGATAACATTCAGATGGACACTAAAAATATTCTTTTTGTATGTGGTGGAGCATTTATCGATCTTGAAAAAACCATTTCGGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCGCCAGTTCGTGCCAATATGAGAACTGGTCGAGTAACAGATTCTTCAGTAACATCATCTTTACTTGAGTCAGTGGAAAGTGCTGATCTTATTGCTTATGGCCTTATACCAGAGTTTATTGGACGATTCCCAATCTTAGTCAGCTTATCAGCTTTAACCGAAGACCAACTTATGATGGTTAAGTTACACTTCACAGAGAAAGCTCTAAGACTGATAGCAAAGAAAGCAATGGTAAAAAATACTGGTGCCAGAGGTTTAAGAGCCCTTCTGGAAAGCATTTTAACTGAAGCCATGTTTGAGATTCCTGATATTAAGACGGGAAGTGACCGAGTTGATGCAGTTGTTGTTGATGGAGAGTCAGTAGGATCACTAACTGCCCCTGGATGTGGAGGGAAGTTTCTTCGTGGAGATGGTGCTTTGGAACAGTACCTAGCTAAGATGAAGGATTTGGCGGTTAATGTTGACGGAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTGA 2061 0.4605 MSRIFGRWKNAKEMALLSGSLPRGHHRTGFIFCPISTHLNMVAGHRRREAPVGVQERYKWDRGGSDDNSYRKIRAEANCPRCTKDMNLVFSNRHFPTPPSESELGGGEREKGYQSVNLCPTCKTAYYFRPYDTVPLQGTFVEIGRVTSTNNNGVNNVSGKGHSPRRIAHGKGGGKDGSSTSKGEEFVGKSNSNASKWLEVSLWETLMTYNGDARGGNGEPPESWLPTPDGSNGNGNGLAVHTPPGPPFAPGTNVIRATGPRNGGSGGGGGGNDEKTAWGGSNLGKELPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGASEVLDDGDNVELEKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQASMNSLMRLVMLEKTSNQYCINYLRYAADFNVVAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTELGSIHGGDNIQMDTKNILFVCGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGRVTDSSVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVKLHFTEKALRLIAKKAMVKNTGARGLRALLESILTEAMFEIPDIKTGSDRVDAVVVDGESVGSLTAPGCGGKFLRGDGALEQYLAKMKDLAVNVDGGESDLQEGDLELSSRAMSL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0462 686 Pfam C-terminal, D2-small domain, of ClpB protein 570 611 IPR019489 -
Aed7g0462 686 MobiDBLite consensus disorder prediction 211 275 - -
Aed7g0462 686 Gene3D - 281 561 IPR027417 -
Aed7g0462 686 SMART AAA_5 350 514 IPR003593 -
Aed7g0462 686 Pfam AAA domain (Cdc48 subfamily) 350 556 IPR003959 GO:0005524|GO:0016887
Aed7g0462 686 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 567 685 - -
Aed7g0462 686 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 567 685 - -
Aed7g0462 686 CDD AAA 351 479 - -
Aed7g0462 686 MobiDBLite consensus disorder prediction 90 110 - -
Aed7g0462 686 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 43 569 - -
Aed7g0462 686 MobiDBLite consensus disorder prediction 150 190 - -
Aed7g0462 686 Gene3D - 562 640 - -
Aed7g0462 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 623 IPR027417 -
Aed7g0462 686 SMART ClpB_D2_small_2 563 633 IPR019489 -
Aed7g0462 686 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 43 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0462 Aed-Chr7 3300643 3310050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0462 K03544 - gmx:100805340 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0462 7 3300643 3310050 Aed8g1971 8 24223148 24227085 PCT