Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1720 ATGACTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAGTTTCTGGAGGAAGAGAAATTCAAAGAATCCGTACACAGGCTTGAGAAAGAATCTGGGTTCTTTTTCAACATGAAGTATTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAGGTTGAGAAGTACTTATCAGGGTTTACCAAAGTTGATGACAATAGATACTCAATGAAAATATTTTTTGAAATCAGGAAACAGAAATATCTGGAAGCGCTTGATGATAAAGACAAGGCTAAGGCTGTGGAGATATTAGTGGGTGATTTAAAAATGTTCTCCACCTTCAATGAGGAGCTGTACAAAGAAATAACCCAGTTATTAACTCTAAATAATTTCAGGGATAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTTCGAACTTTGATCAATCAAAGTCTAAACTGGCAGCACCAGCTCTGCAAAAACCCAAGACCAAATCCTGATATTAAGACTTTATTCAACGATCACACATGTGCACCTCCTAATGGTCCTCTGGCGCCTACACCTGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCTGCTTATACTCCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCTGCAACTGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTACAAGCAGCTGTTGTCACAGCATCAACTATACCTGTCCCACAGAATCAAGTGTCTATCATGAAACGTCCTAGGACACCTCCTGCAACTCCTGGCATGGCTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGTCCTGGTCATTCTGTGGATGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTTGTCGCTGGATGATCTACCAAGAACTGTGACTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCAAATAATGGTGAAATTACCCTCTGGGAACTCAGTTTGCGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATATGTCTGCATGCTCATTACCATTTCAGGCTGCTGTAGTCAAGGATGCACCTATTTCTGTCAGTCGGGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTATTGCTTTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGATCTAACCCAGCGTTTAGAGGTTGATGCTCATGCTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAGTTGTGTATTGTGACTTGTGGAGATGATAAATCTATAAAGGTATGGGATTTAAATGGACGAAAACTATTCTCCTTTGAGGGGCATGAAGCACCTGTATATTCCATTTGTCCCCATCACAAAGAGAACATCCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGTTATACGATAACTTGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAAAAATCTGCTGGTGTTGTCCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGTCAGGTTAAGTTTTGGGACATGGACAATATTAATCTTATTACAAGCATTGATGCTGATGGAGGATTACAGGTATCTGGTGCTTCTACTGTTAATGCTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCAATGGGCCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAATAGATAGAGCTAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGATCAGTTACCATGCCTGAGAGCACAGATTCTTCCAGCAAGGTTGTTAGACTTTTATATACAAACTCTGGTGTTGGTATTTTGGCCCTTGGTTCAAATGGTATCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTAATGCCAATGTTGTTCCACAGCATTGGCAACCCAACAACGGTCTTGTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCTCTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATAGCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAAGGTCACCAGAAGCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGTATAGATACATGGGAGAAAAGAAAATCCATTCCAATACAACTACCTGCAGGAAAGTCACCTGTTGGTGATACGCGTGTACAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAGCGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTCTGTGATGCCAACATTGGCGTTTTTGATGCTGATAGCTTGAGGCTTAGATGTCGTATTGCGTCATCAATTTGCTTGTCACCGGCAGCTTTAAGTGGAAGTCAAGCTTTGTATCCTCTTGTGGTTGCTGCTCATCCACTAGAACCTAACCAGTTTGCTGTCGGGTTGACGGATGGATCTGTGAAAGTGATAGAACCGAGTGAATCAGAGGGTAAGTGGGGAACCTCCCCACCTATGGACAATGGAATAATAATGAATGGTAGGGCAGGATCATCATCTACAACAAGCAACCACACTACTGATCAGGCTCAAAGATAA 3225 0.4236 MTSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDDKDKAKAVEILVGDLKMFSTFNEELYKEITQLLTLNNFRDNEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFNDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTPLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSIMKRPRTPPATPGMADYQNADHEQLMKRLRPGHSVDEVSYPLARQASLSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDMSACSLPFQAAVVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYAYTGSNDLTQRLEVDAHAGGVNDLAFAHPNKQLCIVTCGDDKSIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLITSIDADGGLQVSGASTVNASPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSGVGILALGSNGIQKLWKWARNEQNPTGKANANVVPQHWQPNNGLVMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIASSICLSPAALSGSQALYPLVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGIIMNGRAGSSSTTSNHTTDQAQR 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1720 1074 PANTHER PROTEIN, PUTATIVE-RELATED 1 631 - -
Aed8g1720 1074 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Aed8g1720 1074 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 631 IPR027728 GO:0006355
Aed8g1720 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 491 IPR001680 GO:0005515
Aed8g1720 1074 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Aed8g1720 1074 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 363 892 IPR011047 -
Aed8g1720 1074 MobiDBLite consensus disorder prediction 1036 1074 - -
Aed8g1720 1074 Gene3D - 772 1041 IPR015943 GO:0005515
Aed8g1720 1074 Gene3D - 321 534 IPR015943 GO:0005515
Aed8g1720 1074 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Aed8g1720 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 855 896 IPR001680 GO:0005515
Aed8g1720 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 484 - -
Aed8g1720 1074 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 632 1074 IPR027728 GO:0006355
Aed8g1720 1074 MobiDBLite consensus disorder prediction 1055 1074 - -
Aed8g1720 1074 MobiDBLite consensus disorder prediction 647 667 - -
Aed8g1720 1074 Pfam WD domain, G-beta repeat 854 887 IPR001680 GO:0005515
Aed8g1720 1074 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Aed8g1720 1074 SUPERFAMILY WD40 repeat-like 911 1040 IPR036322 GO:0005515
Aed8g1720 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 855 890 - -
Aed8g1720 1074 Gene3D - 535 753 IPR015943 GO:0005515
Aed8g1720 1074 SMART WD40_4 484 525 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 943 979 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 396 435 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 528 571 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 762 802 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 574 614 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 335 374 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 848 887 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 993 1034 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 439 482 IPR001680 GO:0005515
Aed8g1720 1074 SMART WD40_4 805 845 IPR001680 GO:0005515
Aed8g1720 1074 SMART Lish 4 36 IPR006594 GO:0005515
Aed8g1720 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Aed8g1720 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Aed8g1720 1074 SMART ctlh 34 92 IPR006595 -
Aed8g1720 1074 PANTHER PROTEIN, PUTATIVE-RELATED 632 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1720 Aed-Chr8 22243621 22252130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1720 429 663 Miscellaneous Gene Families AT5G08390 22.857 3.68e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1720 - - gmx:100793575 2017.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1720 8 22243621 22252130 Aed8g1720 8 22243621 22252130 ECH
Aed2g2423 2 27256461 27267921 Aed8g1720 8 22243621 22252130 PCT