Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2423 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTCCAGTTTTTGGAGGAGGAGAAGTTCAAGGACTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGTAAGCAGAAATATCTGGAAGCACTTGATAGGCAAGACAAGCCAAAGGCAGTTGAGATTTTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACACAGCTGTTAACTCTTAGTAACTTCAGGTTGAATGAGCAGCTGTCCAAGTATGCTGACACCAAAACTGCTAGAGGGATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGATAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACATTGATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAACCCTAGACCAAACCCAGATATAAAGACTTTGTTCACTGACCACACATGTACACCTCCTAATGGTCCTCTTGCACCTACACCTGTCAATCTTCCTGTTGCTGCGGTTGCAAAGCCTGCCGCTTATACTTCAATTGGTGCTCATGGTCCCTTTCCGCCTGCCGCAGCTGCTAATGCTTTGGCTGGTTGGATGGTCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTCGTCACAGCATCAACCATACCTGTCCCACACAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTCCGACAACTCCAGGCATTGCTGATTATCCGAATGCTGAACATGAGCAGTTAATGAAAAGACTCTGGTCTGCTCCTTCTGTAGAGGAGGTTTCATATCCTGCTGCTCGACAAGCCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAATCCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAACTTCGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAAATATGGGATACCTCAGCGTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATATCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGAAAAATAAAAGCCTGGTTGTATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACAACAATGCTTTACAGTGCCGATGGAAGTAGACTATTTTCTTGTGGAACTAGTAAAGATGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGGTTCAGAAAGAAATCTGCTGGTGTAGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGACATGGACGATATTAATCTTTTAACAAGCATTGATGCAGATGGTGGACTACAGGCCCTTCCACACTTGAGATACAACAAGGAAGGAAATCTTCTTGCTGTTACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGCTAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTCAAGGCATCTGGCTCTTCTGCTGTTAATGTTGGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAATGGAGTCGATCCCACAGGTCGCAATGTAGAGAAACCTAGAACTGTAGAAGACGGAATAGATAGACCTAAACCATGGCAGGTGTCTGAAATTGTGGATCCTGTCCAATGTCGATTAGTTACCATGCCTGACAGTACGGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTAGTGAACAAAATCCCAATGGGAAGGCAACTGCCAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGCCTTCTTATGACTAATGATGTTGCGGGTGTCAACCTTGATGAAGCTTTTCCCTGCATCGCACTCTCAAAGAATGACTCATATGTTATGTCTGCATGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCATATATATAATGTTAGAGTGGATGAGGTGAAATCTAAACTCAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTATATGGAACATCGATACATGGGAGAAAAGAAAATCAGTTCCTATACAACTACCAGCAGGAAAAGCTCCTGTTGGGGACACTCGTGTGCAGTTCCATCAAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAGTTAGCAATATATGATGCTTCTAAGATGGATCGCATTCGACAGTGGGTTCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAGTTTATGCTACATTTTGCGATGGCAACACTGGGGTTTTTGATGCTGACAGCTTGAGATTAAGATGTCGTTTTGCACTATCCGCATACTTTTCACCTGCAGCAGCTTTAAGTGGGAACCAATCTGTGTATCCTGTTGTGGTTGCGGCTCATCCACTAGAGGCCAACCAATTTGCCATTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTTGGGCCAATGAATCAGAAGATAAGTGGGGAACCAGACCAGCCATGGATAATGGAATGTTGAACGGGAGAACAGCATCATCATCTACAACAAGCAACCACACACCCGATCAGGTACAAAGATAA 3387 0.4302 MTSLSRELVFLILQFLEEEKFKDSVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEISKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRLNEQLSKYADTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFPPAAAANALAGWMVNASASSSVQAAVVTASTIPVPHNQVSILKRPRTPPTTPGIADYPNAEHEQLMKRLWSAPSVEEVSYPAARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQSLLLVGSNNGEITLWELRLRDRLVSKPFKIWDTSASLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDDINLLTSIDADGGLQALPHLRYNKEGNLLAVTTADNGFKILANANGLRSLRTVETPGFEALRSPIESAAVKASGSSAVNVGPVNCKVERSSPVRPSPILNGVDPTGRNVEKPRTVEDGIDRPKPWQVSEIVDPVQCRLVTMPDSTDASSKVVRLLYTNSGAGLLALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAFPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCIWNIDTWEKRKSVPIQLPAGKAPVGDTRVQFHQDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLPAPISYAAYSCNSQLVYATFCDGNTGVFDADSLRLRCRFALSAYFSPAAALSGNQSVYPVVVAAHPLEANQFAIGLTDGSVKVIEPWANESEDKWGTRPAMDNGMLNGRTASSSTTSNHTPDQVQR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2423 1128 SMART WD40_4 857 897 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 570 610 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 1046 1087 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 480 521 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 900 939 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 995 1031 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 524 567 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 435 478 IPR001680 GO:0005515
Aed2g2423 1128 SMART WD40_4 332 371 IPR001680 GO:0005515
Aed2g2423 1128 Pfam WD domain, G-beta repeat 444 478 IPR001680 GO:0005515
Aed2g2423 1128 Pfam WD domain, G-beta repeat 906 939 IPR001680 GO:0005515
Aed2g2423 1128 SUPERFAMILY WD40 repeat-like 772 1086 IPR036322 GO:0005515
Aed2g2423 1128 Gene3D - 558 687 IPR015943 GO:0005515
Aed2g2423 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Aed2g2423 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 926 940 IPR019775 -
Aed2g2423 1128 Gene3D - 320 557 IPR015943 GO:0005515
Aed2g2423 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 444 479 IPR001680 GO:0005515
Aed2g2423 1128 SMART Lish 4 36 IPR006594 GO:0005515
Aed2g2423 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 907 942 - -
Aed2g2423 1128 PANTHER PROTEIN, PUTATIVE-RELATED 1 1128 - -
Aed2g2423 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 907 948 IPR001680 GO:0005515
Aed2g2423 1128 MobiDBLite consensus disorder prediction 1108 1128 - -
Aed2g2423 1128 MobiDBLite consensus disorder prediction 1095 1128 - -
Aed2g2423 1128 Gene3D - 825 1101 IPR015943 GO:0005515
Aed2g2423 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Aed2g2423 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 465 479 IPR019775 -
Aed2g2423 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 336 944 IPR011047 -
Aed2g2423 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 619 IPR001680 GO:0005515
Aed2g2423 1128 SMART ctlh 34 92 IPR006595 -
Aed2g2423 1128 MobiDBLite consensus disorder prediction 700 732 - -
Aed2g2423 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 380 IPR001680 GO:0005515
Aed2g2423 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1128 IPR027728 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2423 Aed-Chr2 27256461 27267921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2423 332 554 Miscellaneous Gene Families AT5G08390 27.511 1.27e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2423 - - gmx:100808421 2090.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2423 2 27256461 27267921 Aed8g1720 8 22243621 22252130 PCT