Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1625 TATTGTTTGATAATCCCTTCTGTGGAAGCTATTATTTTCCGCACTTTTCTTCACTACTTCCGATTTCAGGTTCAGTTGAGACTTGAGAGTAAGAGAGTGATGCTGCAGTGCATATTTCTCGTGTCAGATGCCGGAGAGGTAATGCTAGAGAAACAGCTCACGGGCCACCGCGTGGATCGCTCCATCTGTGCCTGGTTCTGGGAACAAGCCAGTTCACACGGTGACTCCTTCAAGCAACAACCAGTGATTGCTTCTCCTACGCACTATATTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGGCTGCACACAAGTTGAAATGCCACCCTTGATGGCCATTGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAGATGATTACTCTGCCAAATATGGTTGACAAAGCCTTGAGCATTGTCACTGGTAGCAGTTCAAATGTGAGTGATACCCTTCCTGGGGCTACAGCATCTTGTGTTCCCTGGAGAGCGGCAGAGCCAAAGTACTCCAACAATGAAGTCTACGTAGATCTTGTTGAAGATATGGATGCGATTATAAACAGGGATGGGGGTTTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCATATCTCAGGTTTTCCCGATTTAACCCTTTCATTTACAAATCCTTCCATCCTAGATGATATGAGGTTCCATCCGTGTGTTTATTTTCGGCCTTGGGAGTCTCGTCAAGTTCTTTCTTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAAGTTGAAGTGCACCCCAATATATGTAAAACCGCAGTTAACTTCAGATGGAGGGATATGCCATGTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATTGACTCAATTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTATCAGCTGATCTGACTTCAAATCATGGAACAGTGAACATCCTTGCTAAACAGACTTGCATATGGTCCATTGGTCGAATCCCAAAAGATAAAGCCCCTTCCTTGACTGGAACATTAGTGATTGAAACTGGATTGGAGAGCCTTCATGTCTTCCCTACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATTGATAAACTTGATCTGAAGACTGTACCATACCGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCAGGTGAATTTGAAGTAAGATCATAA 1257 0.4296 YCLIIPSVEAIIFRTFLHYFRFQVQLRLESKRVMLQCIFLVSDAGEVMLEKQLTGHRVDRSICAWFWEQASSHGDSFKQQPVIASPTHYIFQVFRDGITFLGCTQVEMPPLMAIELLDEMIDNGFPLTTEPSILREMITLPNMVDKALSIVTGSSSNVSDTLPGATASCVPWRAAEPKYSNNEVYVDLVEDMDAIINRDGGLVKCEIYGEVQVNSHISGFPDLTLSFTNPSILDDMRFHPCVYFRPWESRQVLSFVPPDGQFKLMSYRVRKLKCTPIYVKPQLTSDGGICHVSVLVGIRNDPGKTIDSITVQFQLPPFILSADLTSNHGTVNILAKQTCIWSIGRIPKDKAPSLTGTLVIETGLESLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1625 418 PRINTS Clathrin coat assembly protein signature 103 130 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed8g1625 418 PRINTS Clathrin coat assembly protein signature 233 260 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed8g1625 418 PRINTS Clathrin coat assembly protein signature 340 351 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed8g1625 418 PANTHER CARMINE, ISOFORM A 41 117 - -
Aed8g1625 418 PIRSF AP_complex_mu 34 117 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed8g1625 418 PIRSF AP_complex_mu 112 418 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aed8g1625 418 PANTHER CARMINE, ISOFORM A 114 417 - -
Aed8g1625 418 Gene3D Mu homology domain, subdomain B 275 416 - -
Aed8g1625 418 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 170 417 IPR036168 -
Aed8g1625 418 ProSiteProfiles Mu homology domain (MHD) profile. 181 417 IPR028565 -
Aed8g1625 418 CDD AP-3_Mu3_Cterm 170 417 - -
Aed8g1625 418 PANTHER AP COMPLEX SUBUNIT MU 114 417 - -
Aed8g1625 418 Gene3D Mu homology domain, subdomain B 170 413 - -
Aed8g1625 418 PANTHER AP COMPLEX SUBUNIT MU 41 117 - -
Aed8g1625 418 CDD AP3_Mu_N 36 144 - -
Aed8g1625 418 Pfam Adaptor complexes medium subunit family 170 417 IPR028565 -
Aed8g1625 418 SUPERFAMILY SNARE-like 34 145 IPR011012 -
Aed8g1625 418 Gene3D - 34 114 - -
Aed8g1625 418 Gene3D - 115 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1625 Aed-Chr8 21326673 21329161 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1625 K12398 - gmx:100782926 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2391 2 27042286 27045542 Aed8g1625 8 21326673 21329161 PCT