Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1617 ATGGGGACAGAAAACCCTGGTCGTCCAACCTATCCTTCAAGACCACCACCCTTTGCTGCTGCACAGGGTATGACACCTTTTTCAGCAACTGGTGCCATGGTTGGATCAGAGCCTCCTTCGCCTGCTCCACCATTGGCATCCACGCCATTTTCATCATCTGGGCCTGCAATTCGACCACCAGGGCTACCGAGTTTTAGACCCACACCGCCGGGGCAGTTTAGTGACCCCTCAATGCCTCCTTCCAATTTTCCACCTGCTGCTGGACCTTTGCAGCACTTCTCTTCAAATGCTCAAGCACCTCCCCCACGTGCCATGGGACAACCATCTTTTCCAGCGGCTTCTTTTCAGCCTCAGCCACAGCCACAGCCACAGATGCCTTTTGTTTCAATGGGGTCTCCCCCTTCTGCATTTGCAGGTTCAAATGCTCCTCCTCCCGTGTTTCAGCCATCTTTTCCTGGATATGCACGGCAACAGGCTGGTGCAGAAATGCAAGCTCCAACTATGCATTCCTCTCACCTTAATAATCAAGGAAATTATGGACCTGTCCCACCTGCAGCATATTTGCCTTTTCAACCACATCAAGGAGGTTATGTTCCGCAGCCCCCAATGGCTGCTCCATTAGGCATCCAGCCCATGCAACGCCCAGGATCTGGACCGCCTATAGGTGCTGTTCAGGGCTTGACAGAAGACTTCAATTCACTATCAGTTCAAGCTCGTCCTGGACTCATGGAGTCGTCCATTGATACTGAAGAACTGCCTAGGCCATTGGATGGTGACGTGGAGCCAAAGTCTTTAGCTGAGATGTATCCAATGAACTGCAGTTCTAGATATCTACAACTTACAACCAGTGCAATACCTAGCTCACGGTCCTTGTGTTCGAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCACTTGCAGAATCTCCTGATGGGGAAGAGGTACCCATAGTTAATTTTGCTGCGACTGGTGTTGTACGTTGTAGGAGATGCCGCACATATGTGAATCCATATGTGACATTTACCGAAGGTGGAAGAAAGTTCCAGTGCAACACCTGCTCCTTGCTTAATGAAGATACCACTGGCAGAAGAGTTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACTGTAGAATTTGTTGCCCCAATAGACTATATGGCGCGGCCTCCTATGCCTCCAGTATATTTTTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATTGAGGTTGTGGCGCAAACAATCAAGTCATGCTTAGATGAGCTGCCTGGCTTTCCTCGAACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAGATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCGGATGATCTCCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAACCTTTCTTGATAGTCTGCCATCCATGTTCCAGGACAACATGAATCTGGAGTCTGCTTTTGGTCCTGCTCTTAAGGCTGCCTTTATGATTATGAGTCCACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCACTTGAAATTACGTGGAGATGATTCTAAAGTTTATGGCACAGATAAAGAACACGTTTTAAGATTGCCAGAAGATCCCTTTTACAAGCAAATGGCTGCCGAATTTTCTAAATACCAGATCTCAGTGAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCATCCCTAGGAACTCTGGCAAAGTATACTACTGGTCAAGTGTATTTCTATCCAGCTTTCCAATCAGTCATTCATGGGGAGAAACTACGAAATGAGCTAAGGAGAGACCTTACCAGAGAAACTGGCTGGGAAGCTGTGTTGCGAATTAGATGTGCAAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAGATTTATTAGCACTTCCAGCTGTCGATTGTGATAAAGCCTTTTCCATGCAGCTATCTCTTGAAGAAACATTATTAACAACTCAGACAGTGTATTTCCAAGTTGCATTGGTGTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAGCAGCAGTTCCAGTAGTTACAGACTTGGTAGATATGTATCGCCTAGCTGATACTGGTGCAATTTTATCTCTGTTTAGTAGGCTAGCAATTGAGAAATCATTGTCCCATAAACTGGAAGAAGCACGGAGTGCCGTACAACTTAGAATTGTGAAAGGTCTCCGAGAGTATCGAAATCTCTATGCTGCGCAGCATCGCTTGGTGAATAGGATGATATATCCCGAGTCATTGAAGTTCCTACCCTTGTATGGATTAGCTCTTTGTAGATCAGCACCTCTCCGTGGTGGGTATGGGGATGTTCCTCTAGATGAACGGTGTGCAGCAGGACACACAATGATGACCCTACCAATAAAAAGGTTGTTGAAACTTCTCTACCCTAGTTTGCTTCGACTTGATGAATATCTTCTAAAGGCTGATGACTTGAAAAACATTGATAGAAGGTTACCTTTGACTGTGGAGAGCTTGGATTCTAGGGGCCTTTATATGTATGATGATGGCTTCCAATTCATTATATGGTTTGGTAGACTGATTTCACCAGATGTAGCTAAGAACTTACTTGGGTCTGATGTTGCAGAAGAGTTATCAAAGGTTACTCTTAATGAGAATGATAATGAAATGTCAAGGAGGCTGATGAAAGTACTTGAGAAATTCAGAAGTGACCGTGCATATTACCAGTTGTGCCGTCTTGTGAAGCAAGGCGAACACCCCAGAGAAGGATTCCTTATTCTTTCAAACCTGTTTGAGGACCAGATGGGTGCTAATAGTGGGTATGCTGATTGGATACTACAGATTACCCGACAAGTGCAGCAATCATAG 2946 0.4494 MGTENPGRPTYPSRPPPFAAAQGMTPFSATGAMVGSEPPSPAPPLASTPFSSSGPAIRPPGLPSFRPTPPGQFSDPSMPPSNFPPAAGPLQHFSSNAQAPPPRAMGQPSFPAASFQPQPQPQPQMPFVSMGSPPSAFAGSNAPPPVFQPSFPGYARQQAGAEMQAPTMHSSHLNNQGNYGPVPPAAYLPFQPHQGGYVPQPPMAAPLGIQPMQRPGSGPPIGAVQGLTEDFNSLSVQARPGLMESSIDTEELPRPLDGDVEPKSLAEMYPMNCSSRYLQLTTSAIPSSRSLCSRWHLPLGAVVCPLAESPDGEEVPIVNFAATGVVRCRRCRTYVNPYVTFTEGGRKFQCNTCSLLNEDTTGRRVDLNQRPELTKGTVEFVAPIDYMARPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNMNLESAFGPALKAAFMIMSPLGGKLLIFQNTLPSLGVGHLKLRGDDSKVYGTDKEHVLRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLAKYTTGQVYFYPAFQSVIHGEKLRNELRRDLTRETGWEAVLRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFSMQLSLEETLLTTQTVYFQVALVYTASCGERRIRVHTAAVPVVTDLVDMYRLADTGAILSLFSRLAIEKSLSHKLEEARSAVQLRIVKGLREYRNLYAAQHRLVNRMIYPESLKFLPLYGLALCRSAPLRGGYGDVPLDERCAAGHTMMTLPIKRLLKLLYPSLLRLDEYLLKADDLKNIDRRLPLTVESLDSRGLYMYDDGFQFIIWFGRLISPDVAKNLLGSDVAEELSKVTLNENDNEMSRRLMKVLEKFRSDRAYYQLCRLVKQGEHPREGFLILSNLFEDQMGANSGYADWILQITRQVQQS 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1617 981 PANTHER SEC24-RELATED PROTEIN 31 980 - -
Aed8g1617 981 SUPERFAMILY beta-sandwich domain of Sec23/24 166 726 - -
Aed8g1617 981 Pfam Sec23/Sec24 zinc finger 326 358 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aed8g1617 981 MobiDBLite consensus disorder prediction 60 86 - -
Aed8g1617 981 CDD Sec24-like 391 632 IPR041742 GO:0006886|GO:0006888|GO:0030127
Aed8g1617 981 Pfam Sec23/Sec24 beta-sandwich domain 633 717 IPR012990 -
Aed8g1617 981 SUPERFAMILY Zn-finger domain of Sec23/24 316 390 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aed8g1617 981 MobiDBLite consensus disorder prediction 1 138 - -
Aed8g1617 981 Gene3D von Willebrand factor, type A domain 393 630 IPR036465 -
Aed8g1617 981 Coils Coil 977 981 - -
Aed8g1617 981 SUPERFAMILY Helical domain of Sec23/24 728 835 IPR036175 GO:0006886|GO:0006888|GO:0030127
Aed8g1617 981 Pfam Sec23/Sec24 helical domain 728 831 IPR006900 GO:0006886|GO:0006888|GO:0030127
Aed8g1617 981 MobiDBLite consensus disorder prediction 88 102 - -
Aed8g1617 981 Gene3D - 273 716 - -
Aed8g1617 981 Pfam Sec23/Sec24 trunk domain 391 627 IPR006896 GO:0006886|GO:0006888|GO:0030127
Aed8g1617 981 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 844 980 IPR036180 -
Aed8g1617 981 Gene3D - 272 375 - -
Aed8g1617 981 Gene3D Severin 836 959 IPR029006 -
Aed8g1617 981 SUPERFAMILY vWA-like 391 631 IPR036465 -
Aed8g1617 981 MobiDBLite consensus disorder prediction 114 128 - -
Aed8g1617 981 Gene3D Sec23/Sec24 helical domain 717 978 - -
Aed8g1617 981 PANTHER OS04G0129500 PROTEIN 31 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1617 Aed-Chr8 21273537 21283657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1617 K14007 - gmx:100791083 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2380 2 26967952 26977497 Aed8g1617 8 21273537 21283657 PCT