Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1593 ATGGCTACCCATAGCAGCATGAAGGTGGCGAAGTTGTTGATTCTCGTGACTTTGGCTCAGCTCTTAGCCACCGCTATCTCATCAGATCCTGATCTTCTTCAAGACCTCTGTGTCGCCGATCTTGCCTCAGGTGTGAAAGTGAATGGATTCACCTGCAAAGACACATCCAATGTGAATGCCTCAGATTTCTTCTCAAACATCCTAGCCAAACCAGGAGCCACCAACAACACCTATGGCTCCTTGGTGACTGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACACTTGGTGTCTCTCTGTCAAGAATTGACTATGCCCCAGGTGGCATAAACCCCCCTCACACGCACCCACGTGCCACTGAGGTTGTGTTTGTGCTTGAAGGCCAACTAGATGTTGGGTTCATAACCACATCCAATGTTCTCGTATCAAAGACCATTAGCAAGGGTGACATTTTTGTGTTCCCTAAAGGGTTGGTTCACTTCCAAAAGAACAATGATGCTAAGGCTAATGCTGCTGTGCTTTCAGCTTTCAATAGCCAACTTCCAGGGACACAGTCCATTGCTACAACGTTGTTTGCTGCCACTCCCTCTGTTCCGGACCATGTCTTGACCCAGACCTTTCAGGTTGGAACCAAGGAGGTTCAGAAAATCAAATCTAGGCTTGCACCCAAAAAGTAA 678 0.4794 MATHSSMKVAKLLILVTLAQLLATAISSDPDLLQDLCVADLASGVKVNGFTCKDTSNVNASDFFSNILAKPGATNNTYGSLVTGANVQKVPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFVLEGQLDVGFITTSNVLVSKTISKGDIFVFPKGLVHFQKNNDAKANAAVLSAFNSQLPGTQSIATTLFAATPSVPDHVLTQTFQVGTKEVQKIKSRLAPKK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1593 225 SUPERFAMILY RmlC-like cupins 29 220 IPR011051 -
Aed8g1593 225 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Aed8g1593 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 223 - -
Aed8g1593 225 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Aed8g1593 225 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Aed8g1593 225 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Aed8g1593 225 SMART Cupin_1_3 65 215 IPR006045 -
Aed8g1593 225 Gene3D Jelly Rolls 28 223 IPR014710 -
Aed8g1593 225 CDD cupin_OxOx 29 221 - -
Aed8g1593 225 Pfam Cupin 68 215 IPR006045 -
Aed8g1593 225 PANTHER GERMIN-LIKE PROTEIN 17 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1593 Aed-Chr8 21089557 21092098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1593 7 225 Miscellaneous Gene Families AT3G05930 54.545 4.58e-85 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1593 - - gmx:100817475 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1593 8 21089557 21092098 Aed8g1593 8 21089557 21092098 ECH
Aed2g2360 2 26839406 26840985 Aed8g1593 8 21089557 21092098 PCT