Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2360 ATGAGGCTCACAGGCTCCCTTCTAGTTGTGACTCTTGCTTTGGTGTTAATCACCGTCGCTGCATCAGACCCCGACCCTCTTCAAGACCTTTGTGTCGCAGACCTTGCCTCTGCGGTTAAAGTGAATGGATTCACCTGCAAAGATGCTGCGAAGGTAAATGCCACTGATTTCTTCTCAGACATACTAGCCAAACCTGGTGCCACAAACAACACCTATGGTTCCCTAGTGACTGGAGCCAACGTTCAGAAAATCCCAGGACTGAACACTCTCGGTGTGTCTCTGTCCCGAGTTGACTATGCCCCAGGTGGCATTAACCCACCTCACACGCACCCACGTGCGACGGAGATAGTGTTTGTGCTAGAAGGAACACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTAATCTCGAAGACCATCTACAAGGGTGAGATATTTGTGTTCCCAAAAGGGTTAGTTCACTTCCAAAAGAACAATGCAAAAGAACCTGCCTCAGTGCTTGCAGCATTCAATAGTCAATTGCCTGGGACACAGTCCATTGCTCTAACGTTGTTTACAGCCACACCACCGGTTCCAGACAATGTGTTAACCAAGGCGTTTCAGGTGGGTACCAAGGAGGTTGAGAAAATTAAGTCTAGGCTTGCACCTAAGAATTAA 657 0.481 MRLTGSLLVVTLALVLITVAASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNATDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRVDYAPGGINPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTIYKGEIFVFPKGLVHFQKNNAKEPASVLAAFNSQLPGTQSIALTLFTATPPVPDNVLTKAFQVGTKEVEKIKSRLAPKN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2360 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Aed2g2360 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Aed2g2360 218 PANTHER GERMIN-LIKE PROTEIN 13 216 - -
Aed2g2360 218 SMART Cupin_1_3 59 208 IPR006045 -
Aed2g2360 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Aed2g2360 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Aed2g2360 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Aed2g2360 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Aed2g2360 218 Pfam Cupin 62 207 IPR006045 -
Aed2g2360 218 CDD cupin_OxOx 23 214 - -
Aed2g2360 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2360 Aed-Chr2 26839406 26840985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2360 8 217 Miscellaneous Gene Families AT3G05930 57.820 4.36e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2360 - - gmx:100302722 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2360 2 26839406 26840985 Aed2g2360 2 26839406 26840985 ECH
Aed2g2360 2 26839406 26840985 Aed8g1593 8 21089557 21092098 PCT