Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1564 ATGAAGAGACTTTCAACTTTGGTGGATGTGTTTCTGGTTCTTGCATTGTTCAGTTTTAGCCCATGGACAGTGTGGAGCAGCTCATGCTGCAATCAGATAAACTTGGGGGAAGTCCGGCCTCACAGTGTCAGTATTACTGAATTTGGAGCTGTTGGCGATGGGATCACTCTCAATACAATAGCATTTCAGAATGCCATTTTCTACCTAAATTCATTCGCGGACAAAGGTGGAGCCAAACTTTTTGTCCCAGCCGGCCGGTGGTTAACTGGAAGCTTCGATCTCATCAGCCATCTAACTCTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGACGACTGGCCAGTTGTGGATCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCAGGTGGAAGGCATAGAAGCCTCGTTTATGGGCGCAATTTAACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAACAATTTTTGGAACAAAACACTGGATTATACACGTCCTCATTTGGTTGAGTTGATGAACTCAACTGGGGTTCTCATTTCAAATTTAACTTTCTTGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCAAGTAACCATTCAGAACGTCACAATCATTGCTCCTCTTAGTTCACCAAATACAGATGGCATTGATCCAGATTCTTCAGACAATGTATGCATTGAAGATTGTTATATAAGCACTGGTGACGATCTGATTTCCATAAAAAGTGGATGGGATGGATATGGCGTTTCATTTGGTCGACCCAGCACAAATATTAACATCCACAGGCTCATTGGGACAACTACGAGTGCAGGGATTTCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGTGCAATTAGAATAAAAACTTCTCCCGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGATCTTGGATAACGTAGATATTGCTATTAGGTTCAGTGGCTTATATGGAGAACATCCAGATGACACTTATGACCCAGATGCTCTACCGGTAATAGAAAAGATTACTATCAAGGATGTGATAGGGGAAAATGTCAAACGTGCTGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCGATATCTGCTTATCAAACATCACCCTTAATGTGAGCAAAAAATTGCCATGGAACTGCTCTTACGTTCAAGGATACTCTGACTTGGTTTCACCGGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTCCCTGAGCATTTATCAGACTGTTACTATTTACCAAACCACTTGAAGAGTTTGAGTAATCAAAACTATGGTTCTTGGTTACCGTCAAACCTTGACATTAGTGTTGGCTTCTCAGGTGAGTCAAAATCGATGCTCTCATCTGAAGAGAAATCAGAATCATCCAAAGATTCCAATTCCATTGCTTCATTCTCTTCTCTCATGGCTAGAATATAG 1518 0.4124 MKRLSTLVDVFLVLALFSFSPWTVWSSSCCNQINLGEVRPHSVSITEFGAVGDGITLNTIAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLVYGRNLTDVVITGNNGTIDGQGSIWWNNFWNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTIQNVTIIAPLSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGVSFGRPSTNINIHRLIGTTTSAGISIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILDNVDIAIRFSGLYGEHPDDTYDPDALPVIEKITIKDVIGENVKRAGLIQGIKGDNFVDICLSNITLNVSKKLPWNCSYVQGYSDLVSPEACEPLKERIFPEHLSDCYYLPNHLKSLSNQNYGSWLPSNLDISVGFSGESKSMLSSEEKSESSKDSNSIASFSSLMARI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1564 505 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Aed8g1564 505 PANTHER PECTIN LYASE-RELATED 8 452 - -
Aed8g1564 505 PANTHER OS07G0245200 PROTEIN 8 452 - -
Aed8g1564 505 SMART pbh1 237 269 IPR006626 -
Aed8g1564 505 SMART pbh1 298 319 IPR006626 -
Aed8g1564 505 SMART pbh1 210 236 IPR006626 -
Aed8g1564 505 SMART pbh1 271 292 IPR006626 -
Aed8g1564 505 SMART pbh1 327 348 IPR006626 -
Aed8g1564 505 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Aed8g1564 505 SUPERFAMILY Pectin lyase-like 38 431 IPR011050 -
Aed8g1564 505 Gene3D - 23 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1564 Aed-Chr8 20887070 20893177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1564 1 464 Glycoside Hydrolase AT3G62110 68.220 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1564 - - gmx:100778981 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2333 2 26630234 26635446 Aed8g1564 8 20887070 20893177 PCT