Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2333 ATGAGGACACCTCCTTCAACTCTCGTGGAAGTGGTTCTGGTACTTTCATTGTTCAGTTGTTGTAGCCCATGGACAGTGTGGAGCAAGAGTGACACACTTTGCCAACAGACAAACGAGGAAGTTCGACCTCACAGTGTCAGCATCACCGAATTCGGTGCAGTTGGCGATGGGATCACTCTCAACACAAAAGCATTCCAGAATGCCATCTTCTACTTAAATTCTTTTGCAGACAAAGGCGGAGCGAAGCTTTTTGTTCCGGCTGGCCGGTGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACAAGGATGCAGTCATTCTTGGATCAACGAACCCTGAAGATTGGCCGGTTGTTGATCCTCTTCCGTCGTATGGGAGAGGAAGAGAGTTGCCAGGTGGAAGGCATAAGAGCTTAATTTATGGCCACAATTTGACTGATGTTATCATAACAGGTAACAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAACAGGTTTAGGAACAAAACTCTGGATTATACACGTCCACATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCAAATTTAACATTCTTGAATTCTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCAGGATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAAGACTGTTACATAAGCACTGGTGATGATCTGATTGCCATCAAGAGTGGATGGGATGAGTATGGCATTGCATACAGCCACCCGAGCACAAACATTATCATCCACAGGCTAGTTGGTAAAACTGAAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTTGAAGATGTTCAGTTATACGATTCATATACCGCAATCAGAATAAAGACTACTCCTGGCAGAGGTGGTTATGTTAGAAACATCTATGTCTCTAACGTGAGCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGGGATCATGCAGATGATGGTTATGACCCAGATGCTCTACCTGTAATAGAAAAGATTACAATCAAGGATGTGGTGGGAGAAAATATCAAAACTGCAGGTCTTATAGAGGGTATAAAAGATGACAGTTTTGCCAACATTTGCCTATCAAACATCATCCTTAATGTGACCTCAAACTATCCATGGAACTGCTCCTACGTTAAAGGATATTCTGACTTGGTTCAGCCAGAAGCTTGTGAGCCTCTCAAGGAGAGAATATTCCCTGAGCATTCTTCAGATTGTTACTATTTGTCAAATCAAATTCAAAGTTCGAATAGTCAAAATAGAGGTGCTTCTTGGTTTATGTCTTGCAGGACAAACTTCAGGGGACATAAGAGGTTAAATGGAGTTTTGCCCAAGTGTGATTGTCCATCATCTGCAGAAAGATACCGAGATATGATTGCTTTTTGTAACTTGTGTGCAGTAACAAAATAA 1533 0.4168 MRTPPSTLVEVVLVLSLFSCCSPWTVWSKSDTLCQQTNEEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNRFRNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYSHPSTNIIIHRLVGKTETSAGIAIGSEMSGGVSEVHVEDVQLYDSYTAIRIKTTPGRGGYVRNIYVSNVSLANVDIAIRFTGLYGDHADDGYDPDALPVIEKITIKDVVGENIKTAGLIEGIKDDSFANICLSNIILNVTSNYPWNCSYVKGYSDLVQPEACEPLKERIFPEHSSDCYYLSNQIQSSNSQNRGASWFMSCRTNFRGHKRLNGVLPKCDCPSSAERYRDMIAFCNLCAVTK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2333 510 Pfam Glycosyl hydrolases family 28 141 421 IPR000743 GO:0004650|GO:0005975
Aed2g2333 510 SMART pbh1 302 323 IPR006626 -
Aed2g2333 510 SMART pbh1 274 296 IPR006626 -
Aed2g2333 510 SMART pbh1 213 239 IPR006626 -
Aed2g2333 510 SMART pbh1 240 272 IPR006626 -
Aed2g2333 510 SMART pbh1 331 352 IPR006626 -
Aed2g2333 510 SUPERFAMILY Pectin lyase-like 40 435 IPR011050 -
Aed2g2333 510 Gene3D - 27 423 IPR012334 -
Aed2g2333 510 PANTHER OS07G0245200 PROTEIN 9 457 - -
Aed2g2333 510 PANTHER PECTIN LYASE-RELATED 9 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2333 Aed-Chr2 26630234 26635446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2333 42 469 Glycoside Hydrolase AT3G62110 70.670 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2333 - - gmx:100782602 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2333 2 26630234 26635446 Aed8g1564 8 20887070 20893177 PCT