Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1372 ATGGCCCTCCAAAGACACCACCACCTCTCATTACTTGTTTTTTTCATGTTTTGTTTTGTTGCTTCTTCTCATAGTAGCATCTCAAAAGACTTTATCATGATGAAACAAAGAAGTGCTAAGAAAGATGTTTTGAGCATAAAGAAATTTGGGAAATTGGGTGACATTTCTTCTTCTCTTAAAACGGTTAGTGTCAATGATTATGGAGCTCATGGAGATGGTAAAACCGATGACACTCAGGCATTCAAGAAGGCTTGGGAAGTAGCATGTTCTTCTGGTGGAGCAGTTCTTGTGGTGCCTAAGAATAGGAATTATCTACTCAAGCCATTCACATTTTCTGGCCCTTGCAAATCCAACATCGAAGTCCAGATTTCTGGAACCATTGAAGCATCAGATAACATGTCAGATTACAGCGAAGACCGAACCCACTGGCTTATGTTTGACAATGTTGAGAAACTTTCGGTTAAAGGTGGTGGAACCATTAATGGTAATGGAAACATTTGGTGGCAAAACTCATGCAAAAAGAACAAAAAACTTCCTTGCAAGGATGCCCCTACGGCATTGACTTTCTACAAGTGCAGCAGCTTGACAGTGGAGAATTTGACGATAAAAAATGGGCAACAGATACATGTTCAATTCCAAGACACCGAGAATGTTAAGGTTTCTGGTCTCACTGTGACATCACCTGGGGATAGCCCTAACACCGATGGAATTCACATCACAAACACCCAAAATATTCGAATATCAAGCTCCGTTATAGGAACTGGTGATGATTGTATATCAATTGTGAGTGGATCCAAGGATGTGCTAGCCACAGACATAACTTGTGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGGCAGAGGGATCCAAGGAATTCGTTTCAGGAATAACAGTGAAGGGAGCTAAGTTTTCTGGAACTACAAATGGAATAAGAATCAAGACATGGCAGGGAGGGTCAGGCAGTGCAAGCAACTTCAAGTTTCAGAACATTCAAATGGACAATGGAACAAGTGCTTCTGAAGTGGGTGTGCAATTTGAATGCAGCAAGAACTTTCCATGTCAGGGGATAGTGTTGCAGAACATTGACCTGAAACGTAAAGGTGGAGGAGGAGTGGCCAAGGCTTCATGCAACAGTGTTAATTTGTCATACAAAGGAGATGTTAAACCTCACTGCCCATAG 1185 0.4211 MALQRHHHLSLLVFFMFCFVASSHSSISKDFIMMKQRSAKKDVLSIKKFGKLGDISSSLKTVSVNDYGAHGDGKTDDTQAFKKAWEVACSSGGAVLVVPKNRNYLLKPFTFSGPCKSNIEVQISGTIEASDNMSDYSEDRTHWLMFDNVEKLSVKGGGTINGNGNIWWQNSCKKNKKLPCKDAPTALTFYKCSSLTVENLTIKNGQQIHVQFQDTENVKVSGLTVTSPGDSPNTDGIHITNTQNIRISSSVIGTGDDCISIVSGSKDVLATDITCGPGHGISIGSLGAEGSKEFVSGITVKGAKFSGTTNGIRIKTWQGGSGSASNFKFQNIQMDNGTSASEVGVQFECSKNFPCQGIVLQNIDLKRKGGGGVAKASCNSVNLSYKGDVKPHCP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1372 394 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
Aed8g1372 394 SUPERFAMILY Pectin lyase-like 59 393 IPR011050 -
Aed8g1372 394 PANTHER - 51 338 - -
Aed8g1372 394 PANTHER - 337 393 - -
Aed8g1372 394 PANTHER ENDO POLYGALACTURONASE 51 338 - -
Aed8g1372 394 PANTHER ENDO POLYGALACTURONASE 337 393 - -
Aed8g1372 394 Pfam Glycosyl hydrolases family 28 95 336 IPR000743 GO:0004650|GO:0005975
Aed8g1372 394 Gene3D - 34 390 IPR012334 -
Aed8g1372 394 SMART pbh1 192 212 IPR006626 -
Aed8g1372 394 SMART pbh1 295 316 IPR006626 -
Aed8g1372 394 SMART pbh1 242 263 IPR006626 -
Aed8g1372 394 SMART pbh1 215 241 IPR006626 -
Aed8g1372 394 SMART pbh1 355 377 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1372 Aed-Chr8 17874144 17878458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1372 33 393 Glycoside Hydrolase AT2G41850 54.726 2.31e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1372 K01184 - gmx:100816917 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1372 8 17874144 17878458 Aed4g0441 4 3175888 3178523 PCT