Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0441 ATGGCCCTTCTCATGATCAAACACCTCCTCCTCTCATTCACCATTATTATCATTTCTTTTGTTGCTTGTCATAGTAGCACCTTGCAAGAGGACCCACTAATTAGTAGTATATATGTTGATCATTCACCTAATTCTATTGATGATGGTGGGACATTAATATTCAAGAACTTGGTCAAGCAAAGCACAACAAATGTTTTGAGCTTAAACAAGTTTGACAAGCCTAGTTCCCTTAAAAAGGTTAATGTCAATGATTACGGTGCTAAGGGGAATGGTGATACTGATGACACAGAGGCTTTCAAGAAGGCTTGGGATGTAGTGTGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTCAATTGAACTATTTGCTCAAACCAATCAGATTCTCTGGCCCTTGCGAACCTAATGTTGAAGTTCAGATTTCTGGAACCCTTGAAGCATCAGATGAACCATCAGATTACGAGGATGACAGCAGACACTGGCTTGTGTTTGACAATGTTAAGAAACTCTTTGTTTATGGCGGTGGAACCATTGATGGAAACGGCAACATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGCCCTTGCAAGGATGCCCCAACGGCTCTCACTTTCTATAATTGCGAGGACTTGACAGTTGAGAACTTGAGCATAGAAAATGCTCAACAGATTCATGTTTCATTCCAGGATTCTGTGAATGTTAAGGTTTCTGATCTTAACGTGACTGCGCCAGAGGATAGTCCCAACACTGATGGAATTCATGTCACCAATACGCAAAATATCCAAATCTCAAGCTCTGTCATAGGAACTGGTGATGATTGTATATCTATTGTAGATGGATGTAAAGATGTATTAGCCACAGATATTACCTGTGGACCCGGCCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAATTTGTTTCAGGAATACGAGTGAACAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCGACATCCAATTTCAGAACATTGAAATGGACAACGTGACCAACCCCATAATAATAAATCAAAATTACTGTGACAAAAAAAAGAAGAAATGCAAAAAACTGCTGTCGAAGAAATCCGATATCCAAATAAAGAACGTGTTGTACCAGAACATAACGGGCACAAGTGCTTCTGATATAGCTGTGAAGTTCGATTGCAGTGATAAACTTCCGTGCCAGGAGATAGTGTTGCAGAACATAGACCTTGAATGTGAAGGAGGAGATGATGCCGAGGCTATGTGTAACAATGTTGAATTGTCTTACTTAGGACATGTTAGGCCACGTTGCAACAAAGAAAAGAGAAAGTCATCTACTACTACTATTATTATTACCTCTATTTGGAAGCAATTCTCATGGTATATATGA 1425 0.4021 MALLMIKHLLLSFTIIIISFVACHSSTLQEDPLISSIYVDHSPNSIDDGGTLIFKNLVKQSTTNVLSLNKFDKPSSLKKVNVNDYGAKGNGDTDDTEAFKKAWDVVCSSGEAILVVPQLNYLLKPIRFSGPCEPNVEVQISGTLEASDEPSDYEDDSRHWLVFDNVKKLFVYGGGTIDGNGNIWWKNSCKRNKKRPCKDAPTALTFYNCEDLTVENLSIENAQQIHVSFQDSVNVKVSDLNVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVDGCKDVLATDITCGPGHGISIGSLGAGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVTNPIIINQNYCDKKKKKCKKLLSKKSDIQIKNVLYQNITGTSASDIAVKFDCSDKLPCQEIVLQNIDLECEGGDDAEAMCNNVELSYLGHVRPRCNKEKRKSSTTTIIITSIWKQFSWYI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0441 474 ProSitePatterns Polygalacturonase active site. 289 302 IPR000743 GO:0004650|GO:0005975
Aed4g0441 474 SUPERFAMILY Pectin lyase-like 77 462 IPR011050 -
Aed4g0441 474 Gene3D - 61 472 IPR012334 -
Aed4g0441 474 SMART pbh1 341 362 IPR006626 -
Aed4g0441 474 SMART pbh1 259 280 IPR006626 -
Aed4g0441 474 SMART pbh1 312 333 IPR006626 -
Aed4g0441 474 SMART pbh1 232 258 IPR006626 -
Aed4g0441 474 SMART pbh1 209 229 IPR006626 -
Aed4g0441 474 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Aed4g0441 474 Pfam Glycosyl hydrolases family 28 113 438 IPR000743 GO:0004650|GO:0005975
Aed4g0441 474 PANTHER ENDO POLYGALACTURONASE 8 455 - -
Aed4g0441 474 PANTHER - 8 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0441 Aed-Chr4 3175888 3178523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0441 42 450 Glycoside Hydrolase AT2G41850 54.458 5.11e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0441 K01184 - gmx:100797601 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0441 4 3175888 3178523 Aed4g0441 4 3175888 3178523 ECH
Aed8g1372 8 17874144 17878458 Aed4g0441 4 3175888 3178523 PCT