Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0888 ATGTCTGGGGAAGTTTATGATGGACAAGATGTAGGCTATGTGCCTGAGAACCCTGAGTTTCCACAAAACCATTCAGATGAACTTGATGGTGGGAATGTGATCGATGACATGGGGTTTCCACAACTGCAGCCTGATGAACATGATGCGGACAATTTAGCTGAGGATGCCAATCATCCCGAAAATAATTTTGATGGGAACGATGTTGAAGATTTGCCCAGAAACCCAGATTTTCCACCGCAAGAGCTTGCTGAGGAACAGCATGTTGAAGGAGATGTGACTGAGAATGTTGACTCTGAGGAAAAGCAGGGATCTGAGGAGGATTTGAAAGGAGCTGAAGTAAAGAAGTGGCCAGGGTGGCCTGGAGAGAATGTTTTTAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAAGGAGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGTCCTCCTGGAACTGCAGAAAGAGCTGTAATGATTTCTGCAAAAGAAGAGCCAGATCGCAGCATACCACCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTGGACCCTCATCCTGCCGATGTTGCATCAGTTGCAGGACGCCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATAAAATCCTTTCAAGATACCACAGGTTGCAATATACGCGTTCTTGGTTCAGAACACCTGCCAATTTTTGCTCTGCAAGATGATAGTGTTGTTGAAATACAAGGGGAATCATCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCTACGTAAATTTTTGGTTGACCGCAGCATAGTTGGAGTGTTTGAAACACAAATGCAAAGGTCAGATGTTCGAGCAAACCAGAATGTGCCATCGGGCCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCTGGACCTGGTAGTGGTGGTGGACCTGCTTTTCCACCCAATCCTCAGTATATGCCGCCTTCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCTATGGACAAACACCTTCACCAGGGTCCCCCACCTGCCTATGCAAGAGACGCTTCTATGGGAATTCATTCATCCAGTGCACAGCCGCAACAATCTGTTGTGACTAAGGTCACACAGCACATGCAAATTCCTCTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGAGCAAACATCAGCTACATCCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGAGAGATGACTGTTGAGATAAGTGGCACCGCTTCACAAATACAGGCTGCCCAACAGTTAGTGCAGGTATTTTATTTTAAAGGGTTTTTGCATTCGTCTAATCTACAAGTTAGCAGCTATCTTATTAATTTCATGGCTGAAGCTGCTGCGAATGCGGTGGCAGTACAGGATCATCATATGGGGGGATCAATAAACCATAACAACCACCAAGGTTACAATTCCTATCCTAGTAATGCTCCTCCTGTCTATGCATCTCCACCTTCAAGTGCTGCGGGCCATGTACCTTCTGCAGCAGATTATGGTCCCGTTTATGGCACCAATTATGGTTACTGA 1659 0.4593 MSGEVYDGQDVGYVPENPEFPQNHSDELDGGNVIDDMGFPQLQPDEHDADNLAEDANHPENNFDGNDVEDLPRNPDFPPQELAEEQHVEGDVTENVDSEEKQGSEEDLKGAEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMISAKEEPDRSIPPAVDGLLRVHKQVVNVDPHPADVASVAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDTTGCNIRVLGSEHLPIFALQDDSVVEIQGESSGVHKAVELVAIHLRKFLVDRSIVGVFETQMQRSDVRANQNVPSGPPHQPWGPPQGFPGPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPPPAYARDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQVFYFKGFLHSSNLQVSSYLINFMAEAAANAVAVQDHHMGGSINHNNHQGYNSYPSNAPPVYASPPSSAAGHVPSAADYGPVYGTNYGY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0888 552 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 466 - -
Aed8g0888 552 MobiDBLite consensus disorder prediction 80 113 - -
Aed8g0888 552 Gene3D - 122 290 - -
Aed8g0888 552 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 211 294 IPR036612 GO:0003723
Aed8g0888 552 ProSiteProfiles Type-1 KH domain profile. 213 282 - -
Aed8g0888 552 ProSiteProfiles Type-1 KH domain profile. 399 463 - -
Aed8g0888 552 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 390 466 IPR036612 GO:0003723
Aed8g0888 552 SMART kh_6 212 287 IPR004087 GO:0003676
Aed8g0888 552 SMART kh_6 398 468 IPR004087 GO:0003676
Aed8g0888 552 SMART kh_6 121 194 IPR004087 GO:0003676
Aed8g0888 552 CDD PCBP_like_KH 124 193 - -
Aed8g0888 552 MobiDBLite consensus disorder prediction 318 348 - -
Aed8g0888 552 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 49 466 - -
Aed8g0888 552 MobiDBLite consensus disorder prediction 1 115 - -
Aed8g0888 552 MobiDBLite consensus disorder prediction 41 71 - -
Aed8g0888 552 Pfam KH domain 216 282 IPR004088 GO:0003723
Aed8g0888 552 Pfam KH domain 401 464 IPR004088 GO:0003723
Aed8g0888 552 Pfam KH domain 125 177 IPR004088 GO:0003723
Aed8g0888 552 MobiDBLite consensus disorder prediction 306 393 - -
Aed8g0888 552 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 115 177 IPR036612 GO:0003723
Aed8g0888 552 Gene3D K Homology domain, type 1 386 469 IPR036612 GO:0003723
Aed8g0888 552 CDD PCBP_like_KH 215 283 - -
Aed8g0888 552 CDD KH-I 401 464 - -
Aed8g0888 552 ProSiteProfiles Type-1 KH domain profile. 122 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0888 Aed-Chr8 7631498 7636822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0888 K21444 - gmx:100818363 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0888 8 7631498 7636822 Aed8g0888 8 7631498 7636822 ECH
Aed4g0205 4 1503634 1510528 Aed8g0888 8 7631498 7636822 PCT