Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0859 ATGATTCGTGAAGTCGGTATTGATGGAAATGTAAATTTTGTAGACTTCTTGAAAATTATGGGAAGGACAATGAAGGAAAATCTGACTGAGGAGCTAAAAGACTCGTTCAAAGTATTTGACAGGGATAATGATGGATATATATCAGCTCCTGAGTTGAGACAAGTGATGATGAAATTGGGAGAGAGGCTAACAGATGAAGAAGTTCAACAAATGATTAGAGAAGCAGATTTGGATGGGGATGGTCGAGTTAGCTACGAAGAATTTGCAAGATATATGACGATAAATTGA 288 0.3681 MIREVGIDGNVNFVDFLKIMGRTMKENLTEELKDSFKVFDRDNDGYISAPELRQVMMKLGERLTDEEVQQMIREADLDGDGRVSYEEFARYMTIN 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0859 95 Pfam EF-hand domain pair 30 92 IPR002048 GO:0005509
Aed8g0859 95 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Aed8g0859 95 SUPERFAMILY EF-hand 8 93 IPR011992 -
Aed8g0859 95 SMART efh_1 31 59 IPR002048 GO:0005509
Aed8g0859 95 SMART efh_1 67 95 IPR002048 GO:0005509
Aed8g0859 95 ProSiteProfiles EF-hand calcium-binding domain profile. 27 62 IPR002048 GO:0005509
Aed8g0859 95 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 94 - -
Aed8g0859 95 PANTHER CALCIUM BINDING PROTEIN 1 94 - -
Aed8g0859 95 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Aed8g0859 95 Gene3D - 1 95 - -
Aed8g0859 95 ProSiteProfiles EF-hand calcium-binding domain profile. 63 95 IPR002048 GO:0005509
Aed8g0859 95 CDD EFh 31 93 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0859 Aed-Chr8 7316966 7317572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0859 1 92 EF-hand Containing Proteins AT3G43810 58.947 3.21e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0859 K02183 K13448 gmx:100778454 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0229 4 1646847 1648093 Aed8g0859 8 7316966 7317572 PCT