Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0633 ATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGTAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTCATGGTACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGATTGAGGATCAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCGAAAGTGTCCACGTGGAATCAATTTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAGAATATACAATTCGGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTCCCATGATGTTGATATAAAGAACATCACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTTTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATTACAGTGAGGGACTCGTTTATAAAAGTGTCAGATAATGGTGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCGGGTGTGACATTCAGTAATATTCACATGGAAAGTGTAAAGAATCCAATTATAATTGACCAATTTTACTGCCTCAGCAAGGATTGCGCCAACAAGACCTCTGCAGTCTTTGTAACGGATATAGTTTACACAAACATAAAAGGAACATATGACATGAAGCATCCACCTATGCATTTTGCTTGCAGTGACTCTGTTCCATGCACTAACTTGACCCTCTCAGATATTGAGCTTCTTCCTTCTCAAGGAGACACAGTGCTTGATCCTCTCTGTTGGAGTGCCTATGGAAATTCTGAGACACTAACCATTCCCCCAGTTTTTTGCTTGCTGGAAGGTCTTCCTCAGTCAATTCCAGGCATAGACATAGATCATTGCTGA 990 0.4263 MPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGSHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSFIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVKNPIIIDQFYCLSKDCANKTSAVFVTDIVYTNIKGTYDMKHPPMHFACSDSVPCTNLTLSDIELLPSQGDTVLDPLCWSAYGNSETLTIPPVFCLLEGLPQSIPGIDIDHC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0633 329 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 1 319 - -
Aed8g0633 329 Gene3D - 4 292 IPR012334 -
Aed8g0633 329 ProSitePatterns Polygalacturonase active site. 153 166 IPR000743 GO:0004650|GO:0005975
Aed8g0633 329 SMART pbh1 205 226 IPR006626 -
Aed8g0633 329 SMART pbh1 146 166 IPR006626 -
Aed8g0633 329 SMART pbh1 176 197 IPR006626 -
Aed8g0633 329 SMART pbh1 123 144 IPR006626 -
Aed8g0633 329 SMART pbh1 96 122 IPR006626 -
Aed8g0633 329 Pfam Glycosyl hydrolases family 28 12 283 IPR000743 GO:0004650|GO:0005975
Aed8g0633 329 PANTHER - 1 319 - -
Aed8g0633 329 SUPERFAMILY Pectin lyase-like 3 316 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0633 Aed-Chr8 5491783 5493145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0633 3 329 Glycoside Hydrolase AT1G02460 76.292 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0633 - - gmx:100792285 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0633 8 5491783 5493145 Aed8g0633 8 5491783 5493145 ECH
Aed8g0633 8 5491783 5493145 Aed2g2309 2 26460286 26462892 ECH
Aed2g2309 2 26460286 26462892 Aed8g0633 8 5491783 5493145 PCT