Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2309 ATGAAGCATTCTCAGATTTTACCACTAGCATTCTGTATATTTTTTCTTACTTTAGTTATTCTCGTCCAAGCTAGACATCATCATTCTGGTCATACAAAACATAAGCACTCACATCCTCATAAATCTTCTCAACCTTCAAAGCCTCCTCACAATGAGAACTATAACAATAGCTCAAGCATTTTTGATGTACGAACATTTGGAGCAATAGGAGATGGAGAAACTGATGATACAGAGTCATTCAAGAAGGCATGGGACAGTGCCTGTAGCCAAAGTGAAACAGAAGTTAATGTTATCCTTGCACCACAAGGTTTCTACTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGTGTTTAAGGTTGATGGAATTCTTATGCCACCTGATGGACCTGATTCTTGGCCAAAGAACAACAGTAGGCACCAATGGCTGAATAAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGCCATAAGGTTTTTTACGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGCCCTCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCATATAGAATCAATCTACATAACAGCTCCAAAGCTAAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGACGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGACTGCGTTTCCATTGGATCCGGCTGCAATGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTAGGAAATCACAACTCTAGAGCTTGTGTTTCAAACATTGTGGTGAGAGACTCAATCATAAAAGCAACAGATAATGGGGTTAGGATAAAGACTTGGCAAGGTGGATCAGGATCAGTATCCGGAGTAACGTTCAGCAATATCCACATGGTTAGTGTAAGAAATCCCATCATAATAGACCAGTTCTACTGCCTCACTAAGGAGTGCACCAACAAGACTTCTGCAGTATCTGTATCAGATATTATTTACACAAACATAAAGGGGACTTATGATATAAGGAGTCCCCCTATGCGTTTTGCCTGCAGTGATTCTGTCCCATGCACAAACTTAACACTCTCAGATATCGAGCTTCTTCCTTCTCAAGGAGATATTGTGCATGACCCTTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTCACCATTCCACCGGTTTCTTGCTTGCTTGAGGGCACTCCTCAGTCAGTGTTAGACTATGACATAGCTCGTTGCTGA 1293 0.4076 MKHSQILPLAFCIFFLTLVILVQARHHHSGHTKHKHSHPHKSSQPSKPPHNENYNNSSSIFDVRTFGAIGDGETDDTESFKKAWDSACSQSETEVNVILAPQGFYFLIQSTIFTGPCQGVLVFKVDGILMPPDGPDSWPKNNSRHQWLNKWNVTGRKWFNRWERRKMAIRFFTSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIVVRDSIIKATDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVSVSDIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPSQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDYDIARC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2309 430 SMART pbh1 306 327 IPR006626 -
Aed2g2309 430 SMART pbh1 224 245 IPR006626 -
Aed2g2309 430 SMART pbh1 247 267 IPR006626 -
Aed2g2309 430 SMART pbh1 197 223 IPR006626 -
Aed2g2309 430 SMART pbh1 277 298 IPR006626 -
Aed2g2309 430 MobiDBLite consensus disorder prediction 29 43 - -
Aed2g2309 430 Gene3D - 46 417 IPR012334 -
Aed2g2309 430 ProSitePatterns Polygalacturonase active site. 254 267 IPR000743 GO:0004650|GO:0005975
Aed2g2309 430 SUPERFAMILY Pectin lyase-like 59 420 IPR011050 -
Aed2g2309 430 MobiDBLite consensus disorder prediction 29 54 - -
Aed2g2309 430 Pfam Glycosyl hydrolases family 28 160 384 IPR000743 GO:0004650|GO:0005975
Aed2g2309 430 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 155 - -
Aed2g2309 430 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 162 420 - -
Aed2g2309 430 PANTHER - 6 155 - -
Aed2g2309 430 PANTHER - 162 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2309 Aed-Chr2 26460286 26462892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2309 55 430 Glycoside Hydrolase AT1G02460 63.793 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2309 - - gmx:100778836 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2309 2 26460286 26462892 Aed2g2309 2 26460286 26462892 ECH
Aed8g0633 8 5491783 5493145 Aed2g2309 2 26460286 26462892 ECH
Aed2g2309 2 26460286 26462892 Aed8g0633 8 5491783 5493145 PCT