Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0483 ATGCGGTGCTGCATTCCGACGCTGTTGGCCGTGACCGCCGTTTTGCTGTCGGCGGTGCACGGCGTTTTCCTCCCTCTGGAGCGGAGCATTCCTCCCAGTCACCGCGTGGAGCTGGCGGCGCTGAGAGCTCGTGACAGAATCCGCCACGCCCGAATGCTGCGCGGTGTCGCCGGCGGCGGCGTCGTCGACTTCTCCGTCCAAGGCACCTCCGATCCAAGCTCCATTGGGCTGTATTATACAAAAGTGAAGATGGGAACTCCTCCTAAAGAATTTAGCGTTCAGATTGATACAGGGAGTGATATATTATGGGTGAATTGCAATACTTGCAGTAATTGCCCTCAATCTAGTCAACTAGGGCTTGAGCTGAATTTCTTTGACACGGTTGGGTCGTCCACGGCTAAGTTGATTCCCTGCTCAGACCCGATATGCACTACTGGGGTTCAAGGTGCTGCTTCTGAGTGCTCCATGAGGGCTAATCAGTGCAGCTATACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCAGATGCGATGTATTTTGAATTGATCATGGGACAGCCTCCGAAGGTTAACTCTTCGGCTAACATTATTTTTGGGTGTAGCATTATTCAGTCTGGGGATTTGACTAAGACAGAAAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTCCTCTATCTGTTGTATCACAACTGTCATATCGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGATGGCGATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACTTCTCCCAATTAATCCAGCTGTATTTTCAATATCTAACAACCGAGGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTTCTATAAATACTGTTGTGTCACAATTTGCTACGCCAACAAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACAAGTATTGGTGACATTTTTCCCTTGGTCAGTTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTACACATAATGGTTACGGTGATGGTGCTGAAATGTTGTGCATGGGTTTCCAGAAACTGCAGGAGGGAGTCTCAATTTTAGGAGATCTTGTCCTAAAAGACAAGATAGTTGTGTATGACATAGCTCATCAACGAATTGGATGGGCTAACTACGACTGTTCTTTGTCTGTAAATGTTTCGGTGACTACGAGCAAGGATGAGTACATCAATGCGGGGCAGCTACATGTCGGCAGCTCCGAAAATTGCATTCTTTCTAAGTTACTACTACCTGTAAGCATTGTGGCTCTCTCTATGTACATAATGTTGGTGTGA 1464 0.4583 MRCCIPTLLAVTAVLLSAVHGVFLPLERSIPPSHRVELAALRARDRIRHARMLRGVAGGGVVDFSVQGTSDPSSIGLYYTKVKMGTPPKEFSVQIDTGSDILWVNCNTCSNCPQSSQLGLELNFFDTVGSSTAKLIPCSDPICTTGVQGAASECSMRANQCSYTFQYGDGSGTSGYYVSDAMYFELIMGQPPKVNSSANIIFGCSIIQSGDLTKTEKAVDGIFGFGPGPLSVVSQLSYRGITPKVFSHCLKGDGDGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINPAVFSISNNRGGTIVDCGTTLAYLIQEAYDPLVTSINTVVSQFATPTNSKGNQCYLVSTSIGDIFPLVSLNFEGGASMVLKPEQYLTHNGYGDGAEMLCMGFQKLQEGVSILGDLVLKDKIVVYDIAHQRIGWANYDCSLSVNVSVTTSKDEYINAGQLHVGSSENCILSKLLLPVSIVALSMYIMLV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0483 487 CDD pepsin_A_like_plant 78 437 IPR034161 -
Aed8g0483 487 PANTHER ASPARTYL PROTEASES 7 455 IPR001461 GO:0004190|GO:0006508
Aed8g0483 487 SUPERFAMILY Acid proteases 75 440 IPR021109 -
Aed8g0483 487 Gene3D Acid Proteases 62 264 IPR021109 -
Aed8g0483 487 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 455 - -
Aed8g0483 487 Pfam Xylanase inhibitor N-terminal 78 263 IPR032861 -
Aed8g0483 487 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Aed8g0483 487 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Aed8g0483 487 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Aed8g0483 487 Gene3D Acid Proteases 265 444 IPR021109 -
Aed8g0483 487 Pfam Xylanase inhibitor C-terminal 281 433 IPR032799 -
Aed8g0483 487 ProSiteProfiles Peptidase family A1 domain profile. 78 433 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0483 Aed-Chr8 4101419 4105614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0483 62 438 Miscellaneous Gene Families AT1G44130 28.354 2.53e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0483 - - gmx:100820394 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0483 8 4101419 4105614 Aed8g0483 8 4101419 4105614 ECH
Aed2g1915 2 23753075 23757080 Aed8g0483 8 4101419 4105614 PCT