Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1915 ATGCGGGGTCGTGTTCCCCTGTTGCTGGCGTTAGCTGCGGTGGCGGCTGCGGCAACGGTGGCGTGCGGCGGTTTGGCGGGGACTTTTCTTCCTCTGGAACGGGCCATTCCTCTTAACCAACGAGTCGAACTTGAGGCACTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCGTTGGTGGCGTTGTCGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTTGTTGGGTTGTATTTTACGAAAGTGAAGCTGGGATCTCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGCTAAATTGTATTACTTGCAGTAATTGCCCTCGTTCTAGTGGGTTGGGGGTTGAGCTCGATTTCTTTGACACGGCCAACTCGTCCACTGCTGTGCTTGTTTCCTGTGCGGACCCGATATGTTCTTATGCGGTTCAAACTGCAACAAGTGAATGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACAATGTATTTTGACACAGTTCTGGGAGGGACTGTATTTGCTAATTCTTCATCAACCATCGTTTTTGGGTGTAGCAACTACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACGGGGTGTAACACCCAAAGTCTTCTCTCATTGCTTAAAAGGAGGAGATAATGGAGGAGGCGTGCTAGTTCTTGGTGAAATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCAATTGATTCAAATGTATTTGCAACAGCTAACAATCAAGGAACGATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCTTACACTCCTTTTGTTGATGCTATAACTGCTGCTGTGTCACAGTTTTCGAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGTGTAGGTGATATATTTCCTCAAGTCAATTTAAACTTCATGGGCGGAGCATCGATGGTTTTGAATCCAGAACAATACCTCATGCATTATGGCTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGTGGAGCATGGGTTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAACCAACGAATTGGATGGGCGAATTATGATTGTTCCTTGTCTGTAAATGTCTCTCTGGCTACGAGCAAGAGCAAGGATGCATACATCAACAATTCAGGACAGATGAGTGTGAGCTGCTCCAACATAGGCACTTTCTCCAGGTTGCTAGCTGCAGGCATTGCTGCTTTCCTTGTGCACATAATAGTTTTCAGGGAGTCCTGA 1491 0.4514 MRGRVPLLLALAAVAAAATVACGGLAGTFLPLERAIPLNQRVELEALRARDRARHGRILQGVVGGVVDFSVQGTSDPYFVGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCITCSNCPRSSGLGVELDFFDTANSSTAVLVSCADPICSYAVQTATSECSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDTVLGGTVFANSSSTIVFGCSNYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGGDNGGGVLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSNVFATANNQGTIVDSGTTLAYLVQEAYTPFVDAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVNLNFMGGASMVLNPEQYLMHYGFLDGAAMWCIGFQKVEHGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLSVNVSLATSKSKDAYINNSGQMSVSCSNIGTFSRLLAAGIAAFLVHIIVFRES 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1915 496 CDD pepsin_A_like_plant 83 441 IPR034161 -
Aed2g1915 496 Gene3D Acid Proteases 270 447 IPR021109 -
Aed2g1915 496 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Aed2g1915 496 Gene3D Acid Proteases 67 269 IPR021109 -
Aed2g1915 496 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Aed2g1915 496 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Aed2g1915 496 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Aed2g1915 496 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Aed2g1915 496 PANTHER ASPARTYL PROTEASES 5 459 IPR001461 GO:0004190|GO:0006508
Aed2g1915 496 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Aed2g1915 496 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 459 - -
Aed2g1915 496 SUPERFAMILY Acid proteases 78 444 IPR021109 -
Aed2g1915 496 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1915 Aed-Chr2 23753075 23757080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1915 67 442 Miscellaneous Gene Families AT1G44130 27.638 2.56e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1915 - - gmx:100804147 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1915 2 23753075 23757080 Aed2g1915 2 23753075 23757080 ECH
Aed2g1915 2 23753075 23757080 Aed8g0483 8 4101419 4105614 PCT