Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0439 ATGGAATTCGCAACAAGGACCATGTTCTGTTCGTCTCCACCGTTCCCTCCAAAAACTCACCCTTGCTGGAACACTCTTCCCTCGACTTCTTCTACTTCCGTTTTGATGCTTCGCGAACAAGCTTCCCCCACAGTGGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTCCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATCGGCCTCTTCTGCACACGTCTAAGGAAGACAAGACACCGCAGGCAATGTTAAATACAAGGCAGCTGGATACGGTCACGGTTCATGAAGAGAGTAACACTGGAAATGCTGATCAGGTCGTGCTTGACTTTATGAAGCACCTGCATCACTGGCCTCATTTAGAGAGCTTATTAACTTCCTCACAAACAGGAGAAATTGCTACTTCTTCAACTCTACAGCATGTTTCTGTTGACTCAGAGAAGCAAACAAATGGTGTGCAATGTAATGGAGTTTCTCTGGCTAGGAAAGCTTTGTCTACCTCGAAACAAGGATCCTCATTAGTTGAAGACTTGAAATCAGTTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCCTCTACTAGCTTGGCTGATCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACGATCAAAACAAAGAAAAGTACCCAAGTCGAAAGTTAAAGACGATGAAGCCTACCTTGCAATAAAGGATGCTGCACAAGAAAAGATATGTGTAGAAAAGAAGATAAATGAAGAATATGATCGAAATGATCCCCTGCGCACGTTCTTGTGGGGTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTCAACTGATTTCTCAGATACAGGACCTATTGAGATTGGAAGAAGTGAAGACCAAACTTCAATCTCAATTTGGAAGGGAACCAACTATAGCTGAATGGGCTGAGGGTGCAGGACTTAATTGTCGAAAGCTGAATGCACAGCTTCGTTGTGGTAACAGAAGCAGAGAAAAGCTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCTGGTAGTCGATTTGGTAATTATGCATTTTGGTGGATAAGGCAAGCAATAAGGAAGGCGGTGTTTCGACATTCCAGGACAATCCGTCTACCGGAGAAGGTATATATCCTATTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCGCCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGGATTACAGTAGAAAAGATTGACAAATTGCTGTTTTCTGCAAGAATTCCAATTTCTATGCAGCAAACTGTATGGAGTGATCAAGATACAACTTTCCAGTCGAATAGCGACTGCAAGAATATTGATCTTTTCTTAGTAATTGCATTCTACTGTGAGATTACTGCAGACCCCACAATTGAGTCCACAGATGTGACTGTTGAAAAACAGCTTATGAGGCGGCATGTTCTCAATGTCCTAAGTATCCTACACCCCAAAGAGAGGAGAATTATCCGGTTAAGATATGGTTTTGAGGATGGTGAACAGAAATCTTTAGCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATGCGAGCACTATACAAGCTGAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTCTATAG 1782 0.4209 MEFATRTMFCSSPPFPPKTHPCWNTLPSTSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHTSKEDKTPQAMLNTRQLDTVTVHEESNTGNADQVVLDFMKHLHHWPHLESLLTSSQTGEIATSSTLQHVSVDSEKQTNGVQCNGVSLARKALSTSKQGSSLVEDLKSVKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVKDDEAYLAIKDAAQEKICVEKKINEEYDRNDPLRTFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTIAEWAEGAGLNCRKLNAQLRCGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYILLGKVMEAKKLYIQEGNLRPTKEELARRVGITVEKIDKLLFSARIPISMQQTVWSDQDTTFQSNSDCKNIDLFLVIAFYCEITADPTIESTDVTVEKQLMRRHVLNVLSILHPKERRIIRLRYGFEDGEQKSLAEIGDIFGLSKERVRQLEMRALYKLKKCLVKQGLDAYVDLLL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0439 593 Pfam Sigma-70, region 4 526 578 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 Gene3D - 412 482 IPR036388 -
Aed8g0439 593 Pfam Sigma-70 region 2 339 408 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 335 580 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 497 589 IPR013324 -
Aed8g0439 593 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 479 IPR013324 -
Aed8g0439 593 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 260 409 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 ProSitePatterns Sigma-70 factors family signature 2. 550 576 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 PRINTS Major sigma-70 factor signature 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 PRINTS Major sigma-70 factor signature 387 395 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 PRINTS Major sigma-70 factor signature 550 565 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 PRINTS Major sigma-70 factor signature 565 576 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 PRINTS Major sigma-70 factor signature 529 541 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 Pfam Sigma-70 region 3 420 480 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 ProSitePatterns Sigma-70 factors family signature 1. 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed8g0439 593 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 5 593 - -
Aed8g0439 593 Gene3D - 203 408 - -
Aed8g0439 593 Gene3D - 508 581 IPR036388 -
Aed8g0439 593 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 5 593 - -
Aed8g0439 593 CDD Sigma70_r4 519 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0439 Aed-Chr8 3651094 3656897 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0439 - - gmx:100778636 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0439 8 3651094 3656897 Aed8g0439 8 3651094 3656897 ECH
Aed2g1863 2 23326533 23330826 Aed8g0439 8 3651094 3656897 PCT