Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1863 ATGCAATTCCTCCCTAGAAACTGGAAATTGGACACGTCGTCCTACACGACCACCATGTTTTCTTCGTCTCCACCGTTTCCTTTGTCTTCAGTTACGAAGCTTCCTGAACAAGCTGCTTCTGCAGTTGCCTCATGGTCTTCTACTTCTGCAGCTCAGCATTTTCCTACTTCGGCAACATTGAATACAAGGCAGATGGATATGACCTCAGTTCACGAGAAAGGTAACGTGGGCAATGACGATCAGTTAGCGCATGACTTTGTGCAGCAGTTGCATCTCTGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGAGAATTGCTGCTTCTTCTTCGATTCTGCAGTCTGTTGATATTGATTCTGAGAGGCCTGCAGATGGTCTGCCAGGGAATGCCGTTTCTCTTGCACAGCAAGCTTTGTCAGCCTCAAAGCAAGCAGCTTCAATAACTGGAGAGATAAAATTATTTGAAGCTGATGACGATGATCCACTTCCTTTTGGTCTGGCCTCCACAAGTATGGCCGACTCTTCTTCACTCAACAAGAATAAAATTGTGAGGTCAACACGGATTATTGAAAGACGGTCTAAACAAAGAAAAGCATCAAAGTCAAGAGTTCTCGACGAAGAAAGTTATCTTGAAAGAAAGTCTGATGTACAGAGAAGGTCACATTTAGAAAAGAAGATAAAAGAAGGGTTTGATCTAAATGACCCCCTGCGCTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAATTACAGGACTTATCAAGATTCGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGCCGTGGGCCTTTGTTGTTATGCCCTGCAGACACAGCTTCATTGTGCTAAAAGAAGCAAAGAAAAGCTGTTTCATGCCAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACAGGTCTTATGAAGAGCATCGAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATGCAATAAGGAAGTCCATATTTCTACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATACCCTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATACATTCAGGAAGGAAATCTTCACCCCACCAAAGAAGAATTAGCAAGAAGGGTAGGAATTACCATTGAAAAGTTGGACAATTTACTATTTGCTTCAAGAAATCCAATTTCGATGCAGAAAACTGTGTGGGCGGACCAAGATACAACTTTCCAGGAGATTACTTCAGACTCAGCAATTGAGATCCCAGATGTGACTGTCTCAAAACAGCTAATGAGGAGGCATGTGCACAACCTCCTAAATATCTTAACCCCAAAAGAAAAGGGCATAATCAGGCTAAGATTTGGCATTGAGGATGGCAAGGAGAAAACATTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGGGTCCGACAGTTGGAGCGCCGAGCATTGTCCAAGCTCAAGCAGTGTCTTGAAAGTCAAGGGCTTGATGCATACATAGACATGCTTGTATAG 1656 0.433 MQFLPRNWKLDTSSYTTTMFSSSPPFPLSSVTKLPEQAASAVASWSSTSAAQHFPTSATLNTRQMDMTSVHEKGNVGNDDQLAHDFVQQLHLWSHLQNLLTCSPTRRIAASSSILQSVDIDSERPADGLPGNAVSLAQQALSASKQAASITGEIKLFEADDDDPLPFGLASTSMADSSSLNKNKIVRSTRIIERRSKQRKASKSRVLDEESYLERKSDVQRRSHLEKKIKEGFDLNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLCCYALQTQLHCAKRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAIRKSIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELARRVGITIEKLDNLLFASRNPISMQKTVWADQDTTFQEITSDSAIEIPDVTVSKQLMRRHVHNLLNILTPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLERRALSKLKQCLESQGLDAYIDMLV 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1863 551 Pfam Sigma-70 region 3 396 467 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 236 385 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 Gene3D - 388 464 IPR036388 -
Aed2g1863 551 Gene3D - 169 384 - -
Aed2g1863 551 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 57 551 - -
Aed2g1863 551 CDD Sigma70_r4 477 535 - -
Aed2g1863 551 Pfam Sigma-70, region 4 483 536 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 Gene3D - 465 548 IPR036388 -
Aed2g1863 551 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 388 461 IPR013324 -
Aed2g1863 551 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 57 551 - -
Aed2g1863 551 Pfam Sigma-70 region 2 315 379 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 313 538 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 448 547 IPR013324 -
Aed2g1863 551 PRINTS Major sigma-70 factor signature 523 534 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 PRINTS Major sigma-70 factor signature 508 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 PRINTS Major sigma-70 factor signature 487 499 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 PRINTS Major sigma-70 factor signature 363 371 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 PRINTS Major sigma-70 factor signature 339 352 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed2g1863 551 ProSitePatterns Sigma-70 factors family signature 2. 508 534 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1863 Aed-Chr2 23326533 23330826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1863 - - gmx:100815699 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1863 2 23326533 23330826 Aed2g1863 2 23326533 23330826 ECH
Aed2g1863 2 23326533 23330826 Aed8g0439 8 3651094 3656897 PCT