Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2398 ATGAGTAGACCAACAACACGGAGTAAAAATAAAAGACAGAAACAAGGGGATGATGGCAATGGCACTGGTGAAATATGGAGGAAAATTCATAATACAGGTGTGGTAACTGAGGATGACTTGAATCAATTGTATATGATTTGGAAGCCGGTTTGTTTGGGATGTCGTGTCAATACCAAAGATAACCCAAATTGCTTTTGTGCTTTGGTTCCCCCTCTAAATGGAGCCCGAAAGTCTGGCCTATGGCAAAAGATGTCAGATTTTGTTGAAAGTCTTGGCCATGACCCAACCAAGGATCTTCGAGCTTCTGCTGATTCTCCTGCAGGTCTCACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTCCAGTGTTTGTACATGAATAAATCTTTCAGAGAGGGCATATTTTCTGTAGAACAAGATGTTTTACAACAACAGCCTGTGCTAGATCAGTTGGCTCGACTTTTTGTGCAGTTGCATATTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGCTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACACTGCTTCTCTCTTTGCTTGAGCGTTGTCTGAGCCATTCCAAAGTGCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACGACGTGCTCACAATGTGGAAGAGACTCAGAAGCTTCTTCCAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCCTAGATGAATATCTCACTCTTGAAGAGCTTAATGGAGACAATCAATATTTTTGCGAGTCGTGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTGCCCAAAGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCTAAGACTACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCGATTTGGTATATGATTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCTCACATCAAAGATGTAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAGTTTGGGTTGTCATCCATTTGGTGAAGGGTCTTCAAGTTCTACTACTAAATCCACAAAGACTGATGCAATTCATTCTGATAGTTCTGAAGCAATGATAGCTGACAGTAATGGAAATGGTATAAATGCCACTCCTTCACAATCTTCGCATGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACAAAAAATGTAGGTGAAAGTGGGGGTGTAATTTGTGGTGCTAACCATAAAGAAAGAGAGGGTGTTGCTGCTGTGCAAAATGGTGCTCCTCTTCCATCTCATATTTATGATGAGATTCAAAATTTCAACACCTCATATGATGATGCTTGTCAGCAGTACAATAATAGGAAAGAGTTAGAATTGAGTTGTATTAGTGAGAGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCAATGGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGTCAGTGGGCCGACAACATTATTCCTATTCCTCTTGACAACACGTCTGTCCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGATTGTCTGCTAAAGCATGGGACACATTGTTCTCCAAGTATGGTGGGGGGCCAGCATTGTCTCATGATAACCACTGTAGGGATTGCCTGATTCATGGGGCTATGACAGTGGTGTCAGCTGACACCTATCGGGATAGAAGAGAATCAATGAAGTTACTTGCACGGGATATTCTAGATGGAAACTGCGTAGATGGAAAGTATTACATATCCAGATCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACTGCAGCCATTAGTTGTCCACATGGTCAACTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGAGCTTTTGGCTCTTCTTATATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTGGGTGGCCAAACTTTTTCTTTAGATTCTGAAGAGTGTTCTGAATGCAGTAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAGCAACGTCAGAATCATGAGAAATTGTTCCAGGCTAAAAGTATGCCACTTTCTCTGCATTGCAAGTATTTCTTGGTGCCTTCATCATGGATTTCCAAATGGAGAAATTACATTAGTCCAACCCTGAAGAATTCTGATAAACCTGAAACTTTAGATGGGCACTCGCAGCTTGTTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAATCTTCTGCAGGTGGCTTAACTATTATATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGCAGTATTGAGACCAAAGGAATATCTGCAACAATTGATCATGTTAATGATTCAGAGAATGTTTTAACTGGATCCAGTGAGGAGATGCTAATATGTAAGGATCAGTTGGGCACGGCAGATAAAATGAATTTTGAAAATGGGACTGGACAAATATTGGTGAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAGAGCTGTGAGCTAATGCAGAAACTTAATTATTGCAATGAGGACATATGTGTAGTTCTTGTTCGTGGTAAGGAGGTACCTAGATCAATATTGGAGGCTTCAAAGGGATCTGTTGAAACAGACCGGCGAGTTTCCAAGCGATCCCGCAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGGTGATAGGATAATTGATAGTGATAATGAATGTGGTACCCTCGCAGATGTGAACATATTTGCTGGAGATCAGATTATAGTAAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACAGAGGAAGGATTCCGTGGAACACTACTCACAGCAAATGTTTCATCCCAGGTTGTTTAA 3222 0.4078 MSRPTTRSKNKRQKQGDDGNGTGEIWRKIHNTGVVTEDDLNQLYMIWKPVCLGCRVNTKDNPNCFCALVPPLNGARKSGLWQKMSDFVESLGHDPTKDLRASADSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEQDVLQQQPVLDQLARLFVQLHISKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTLEELNGDNQYFCESCKTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRHRMSELSQFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTSLGCHPFGEGSSSSTTKSTKTDAIHSDSSEAMIADSNGNGINATPSQSSHVETFLSSDAYMLMYHLKHTKNVGESGGVICGANHKEREGVAAVQNGAPLPSHIYDEIQNFNTSYDDACQQYNNRKELELSCISERRQEVRSVLAEAPVQPMEQPFYWISSEWLRQWADNIIPIPLDNTSVQCSHGKVPVSKVTSMKRLSAKAWDTLFSKYGGGPALSHDNHCRDCLIHGAMTVVSADTYRDRRESMKLLARDILDGNCVDGKYYISRSWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAPGAKRVLIPESFWLFLYEDAVSVKPDDPLGGQTFSLDSEECSECSNELSEVACLEDSLRLVKQKQRQNHEKLFQAKSMPLSLHCKYFLVPSSWISKWRNYISPTLKNSDKPETLDGHSQLVERPPELVFRRGAIIQRESSAGGLTIISENDWKCFCEEWGSIETKGISATIDHVNDSENVLTGSSEEMLICKDQLGTADKMNFENGTGQILVKTCPEVCESCIGEKESCELMQKLNYCNEDICVVLVRGKEVPRSILEASKGSVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSDNECGTLADVNIFAGDQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTANVSSQVV 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2398 1073 MobiDBLite consensus disorder prediction 389 407 - -
Aed7g2398 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Aed7g2398 1073 ProSiteProfiles DUSP domain profile. 513 605 IPR006615 GO:0004843
Aed7g2398 1073 SMART dusp 531 602 IPR006615 GO:0004843
Aed7g2398 1073 MobiDBLite consensus disorder prediction 1 25 - -
Aed7g2398 1073 CDD Ubl_USP48 963 1064 IPR044743 GO:0004197|GO:0004843|GO:0016579
Aed7g2398 1073 Gene3D - 744 856 IPR035927 -
Aed7g2398 1073 Gene3D - 962 1033 - -
Aed7g2398 1073 SUPERFAMILY Cysteine proteinases 106 451 IPR038765 -
Aed7g2398 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Aed7g2398 1073 ProSiteProfiles DUSP domain profile. 620 727 IPR006615 GO:0004843
Aed7g2398 1073 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Aed7g2398 1073 SUPERFAMILY Ubiquitin-like 964 1030 IPR029071 -
Aed7g2398 1073 ProSiteProfiles DUSP domain profile. 748 859 IPR006615 GO:0004843
Aed7g2398 1073 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Aed7g2398 1073 Gene3D Cysteine proteinases 91 450 - -
Aed7g2398 1073 Gene3D - 505 606 IPR035927 -
Aed7g2398 1073 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Aed7g2398 1073 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1043 - -
Aed7g2398 1073 MobiDBLite consensus disorder prediction 10 24 - -
Aed7g2398 1073 MobiDBLite consensus disorder prediction 388 407 - -
Aed7g2398 1073 SUPERFAMILY DUSP-like 517 605 IPR035927 -
Aed7g2398 1073 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2398 Aed-Chr7 25923170 25932915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2398 105 385 Miscellaneous Gene Families AT4G31670 29.568 3.99e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2398 - K11858 gmx:100815770 2033.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1077 6 15256668 15264522 Aed7g2398 7 25923170 25932915 PCT