Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1077 ATGACTAGACCAACAACTCGAAGTAAAAATAAAAGGAAGAGACAGGGAGAGGATGATGATGGCAGCACTTCGGAAATATGGAGGAAAATTCACAAAACGGGTGTGATGACTGAAGATGATATGAATCAACTGTATATGATTTGGAAGCCAGTCTGTTCAGGCTGTCGTGTTAATACTAGAGACAACCCGAATTGCTTCTGTGCATTGGTTCCACCTATAAATGGTACCCGGAAGTCTGGTTTATGGCAGAAGATCTCTGACTTTGTTGAAAGTCTTGGTCCTGACCCGAATGAGGATCTTCGTGCTTCTGATAGTTCACCTGCAGGTCTGACTAATCTTGGTGCAACATGCTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATATTTTCTGTAGAACTGGATGTTTTACAACAACAACCAGTGTTGGATCAACTGACTCGGCTTTTTGTACAGTTGCATGCTAGTAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAGTTAGACAATAGAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTGTCATTACTTGAGTGTTGTTTGAGCCATTCTAAAATTGCCAAGACAAGAACAATGGTTCAAGATCTTTTCCGAGGAAGTGTGTCTCATGTGACAACGTGTTTGCAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTTTATGGGTTAGAGTTGAATATCAATGGATTGAAAGGTTTAGATGAGAGCCTAGATGATTACCTCGCTATTGAAGAGCTTCATGGAGACAATAAATATTTTTGCGAGTCATGTAAAACAAGAGTGGATGCTACTCGCAGCATCAAGCTGTGTACATTACCAGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAACGAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGCCATAGATTGTCTGAGCCATCTCAGTTTGAATTGATATATGACCTGTCAGCTGTACTGATTCACAAAGGAACTGCTGTTAATAATGGTCATTACATTGCGCATATTAAGGATGCAAACACTGGGCAATGGTGGGAATTTGATGACGAGCTTGTTACTAACTTGGGTTGTCATCCATTTGGGGAAGGAACTTCTTCTACTTCTAAATCTGTTAAGACAGATGTACTTCATTCTAATTGCTCTGAAGCAATGCTAGCTGATACTAATGGTTTAGATGCCACTCATTCACAATCTTCACCTGTGGAGACATTTTTATCTAGTGATGCTTACATGTTGATGTACCATCTTAAGCATAGCAAAAATGTTGGTGAAAAGGGGGGAATGGTTTGTGGTGCTGACCTTAAAGAAGTAGAGGGCAATGCAGTTACTGCGCAAGACAGTGCTTGTCTTCCATCTCATCTTTGTGAAGAGATTCAATATTTCAATGCTTCATATCTTGATTCTTGTGAGCATTACAAACATAGGAAAAAGATAGAATTGAGCCGTATCAGTGAGAGGAGACAGGAAGTTCGATCCGTTTTAGCTGAAGCTCCTACTCAACCACTGGAACAACCATATTTTTGGATTTGTAGTGACTGGCTTCGCCAGTGGGCTGACAACATTATTCCAATTGCTCTTGACAATACATCTATCCAATGTTCACATGGGAAAGTCCCAGTGTCAAAGGTTGCCTCAATGAAGCGATTATCTTCTAAAGCATGGGATAAATTATTGTGTAAGTATGGTGGGGGACCAACTCTTTCTCATGATGACTGCTGTTGGGATTGTCTGATTGATGGGGCTCAGAATGTGGTGTCAGCTGACACCTATCGGGATCAAAGAGAATCATTGAAGCAACTTGCACGGGATATTCTTGATGGGCATTGTGAAGACGGAATGTACTATGTGTCTAAACCATGGTTGCAGCAATGGTGTAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGAACCAACAGCAGCCATTTGTTGTTCACATGGGCAACTTATGCCCGAGCAAGCTGCTGGTGCTAAGCGGTTGCTTGTTCCTGAGGGTTTCTGGCTTTTCTTATATAATGATGCCATTTCCGTAAAACCTGATGATCCTCTAGGTTGCCCTACTTTTCCTTTAGACTCTAGAGAGTGTTCCCAATGCAGTGATGAATTATCTGAAGAGGACTCTTTAAGATTAATAAAACAAATGCAGTGCCAAAATCATGAGAAATTATTTGTTGGTAAAAGTATGCCGATTTCTGTACATTGCAAGTATTTCTTAGTTCCTTCTTCGTGGATTTCAAAATGGAGAAATTACATTAATTCGGCTGTCAAGAATTCAGATAAACCTGAAACTTTAGATGGAGTAATTGATTCACTGATGTGTGAAAAGCACTCACGGCTTGTTGAAAGACCTCCTGAACTGGTTTTCAGACGTGGTGCTATAATCCCGAGAGAATCTTCTGTAAGTGGCTTAACCATCATATGTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGAGTGGTATTGAGACCAAAGGAATATCTGCAAAAATTGAGAATGTTAATGATTCAGAAAATGCTTTATCTGGCTCCTGCAGAGATATGCCAATATGCGAGGATCAATTTGAGACTTGGGATAAAGTGAATAATGAAAGTGGGAATGAACATATTGTCATTAAAACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCTGTGAGTTAATGCAGAAACTTGTCTATTGCAATAAAGACATTAGCGTAATTCTTGTCCGTGGAAAGGAGGTCCCCAGGTCAATCTTGGATGCTTCAAAGGGCTTTGTTGAAACAGACAGGCGGGTTTCCAAACGTTCCCGGAAGACTAAAAATGGGAGTTCCATTAGTCTAAAAGTTTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGTGATAGAACAATTGATGATGATAACGAATATGCTACGCTTGTGGATGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCAGATGAGCTTTGCGATGAGGAAATGGAAACACAGCATATTGAGACAGGGTTTCGTGGAACACTCTTAACATCGAATGTTTCATCTCAGGTGGTTTAG 3234 0.3995 MTRPTTRSKNKRKRQGEDDDGSTSEIWRKIHKTGVMTEDDMNQLYMIWKPVCSGCRVNTRDNPNCFCALVPPINGTRKSGLWQKISDFVESLGPDPNEDLRASDSSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVELDVLQQQPVLDQLTRLFVQLHASKMAFIDSSPFVKTLELDNRVQQDSHEFLTLLLSLLECCLSHSKIAKTRTMVQDLFRGSVSHVTTCLQCGRDSEASSKMEDFYGLELNINGLKGLDESLDDYLAIEELHGDNKYFCESCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQNTTKKKITSAFSFPAELDMRHRLSEPSQFELIYDLSAVLIHKGTAVNNGHYIAHIKDANTGQWWEFDDELVTNLGCHPFGEGTSSTSKSVKTDVLHSNCSEAMLADTNGLDATHSQSSPVETFLSSDAYMLMYHLKHSKNVGEKGGMVCGADLKEVEGNAVTAQDSACLPSHLCEEIQYFNASYLDSCEHYKHRKKIELSRISERRQEVRSVLAEAPTQPLEQPYFWICSDWLRQWADNIIPIALDNTSIQCSHGKVPVSKVASMKRLSSKAWDKLLCKYGGGPTLSHDDCCWDCLIDGAQNVVSADTYRDQRESLKQLARDILDGHCEDGMYYVSKPWLQQWCKRKVVDAPSEADAEPTAAICCSHGQLMPEQAAGAKRLLVPEGFWLFLYNDAISVKPDDPLGCPTFPLDSRECSQCSDELSEEDSLRLIKQMQCQNHEKLFVGKSMPISVHCKYFLVPSSWISKWRNYINSAVKNSDKPETLDGVIDSLMCEKHSRLVERPPELVFRRGAIIPRESSVSGLTIICENDWKCFCEEWSGIETKGISAKIENVNDSENALSGSCRDMPICEDQFETWDKVNNESGNEHIVIKTCPEVCESCIGEKESCELMQKLVYCNKDISVILVRGKEVPRSILDASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSIYQLKMMIWESFGVVKENQILQKGDRTIDDDNEYATLVDVNIFAGDQIIVRDSEIHENRDIADELCDEEMETQHIETGFRGTLLTSNVSSQVV 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1077 1077 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 345 363 IPR018200 GO:0004843|GO:0006511
Aed6g1077 1077 ProSiteProfiles DUSP domain profile. 743 863 IPR006615 GO:0004843
Aed6g1077 1077 MobiDBLite consensus disorder prediction 1 25 - -
Aed6g1077 1077 ProSiteProfiles DUSP domain profile. 619 721 IPR006615 GO:0004843
Aed6g1077 1077 Gene3D Cysteine proteinases 94 448 - -
Aed6g1077 1077 CDD Peptidase_C19L 109 445 IPR033841 GO:0004843
Aed6g1077 1077 Gene3D - 966 1037 - -
Aed6g1077 1077 SUPERFAMILY Cysteine proteinases 107 445 IPR038765 -
Aed6g1077 1077 ProSiteProfiles Ubiquitin domain profile. 968 1034 IPR000626 GO:0005515
Aed6g1077 1077 SUPERFAMILY DUSP-like 513 603 IPR035927 -
Aed6g1077 1077 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 108 448 IPR028889 -
Aed6g1077 1077 MobiDBLite consensus disorder prediction 11 25 - -
Aed6g1077 1077 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 109 124 IPR018200 GO:0004843|GO:0006511
Aed6g1077 1077 Pfam Ubiquitin carboxyl-terminal hydrolase 109 445 IPR001394 GO:0004843|GO:0016579
Aed6g1077 1077 ProSiteProfiles DUSP domain profile. 512 604 IPR006615 GO:0004843
Aed6g1077 1077 SMART dusp 530 601 IPR006615 GO:0004843
Aed6g1077 1077 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1047 - -
Aed6g1077 1077 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1047 - -
Aed6g1077 1077 SUPERFAMILY Ubiquitin-like 968 1037 IPR029071 -
Aed6g1077 1077 CDD Ubl_USP48 967 1070 IPR044743 GO:0004197|GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1077 Aed-Chr6 15256668 15264522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1077 106 380 Miscellaneous Gene Families AT4G31670 29.966 8.62e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1077 - - gmx:100795556 2001.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1077 6 15256668 15264522 Aed7g2398 7 25923170 25932915 PCT