Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2364 TCCCTGCGTCATTGTTTTTTCCTCCTCTCTTCTTTCTTTGTTAGGGTTTGCACGCTTCCATTCTCCCCAAACTATACTTTGCTTCTGCAAGGAAAGAATTCCACCGTGCTCTCCGATAAGGGGTTTCTCAAACCAGGAGCAATGTCTTCCTCTTATCTTCCTGCCACAACTGATTCACTTGCTCTTGCAACCGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCAGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATGAAAGAGCAAGCAATCACAAACCTGACTAAGCTTCTCACGGAAGAGAGTAGGGGAGAGGATCTGCGTAGCCTTCTCACCCAGTTGAGGCCATTCTTCTCCTTGATACCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACGCAGTTGCTAAAATACCAGGAACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTGTGGACTCGTGCTGAAAAGCGTACCTTTTTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGCTTGGTCAAAGAGGTTAGGAGATTAGATGACAAGCTTCTTCTTGTAGACATAGATTTGCTGGAAAGCAAGCTGCACTTCTCATTAAGAAACCTTCCAAAGGCCAAAGCTGCACTCACGGCTGCAAGAACTGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGGGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAAGAGAAGGATTATAAAACTGCTTATAGTTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCGAAGGCTGTTTTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGAGGAATTATTTCTTCTAAAGCAGGGCTGCAATATCTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAACTTGTTTGAAATTGCTTTGCGGGACTACAAGGCACAGTTGGAGGAAGATCCAATTGTCCACAGGCACCTTTCATCTCTGTATGATACCCTTATGGAGCAGAATCTTTGCAGATTGATCGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCACTGATCACGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGACGATCCTAAGACTGATGCTATATATCCTGCAACCCTGGAGACCATTTCCAATATTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1410 0.4397 SLRHCFFLLSSFFVRVCTLPFSPNYTLLLQGKNSTVLSDKGFLKPGAMSSSYLPATTDSLALATEAKDPSEAISILYQVLDDPSSSPDALRMKEQAITNLTKLLTEESRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMESKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLNLFEIALRDYKAQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPTDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2364 469 Gene3D - 93 468 - -
Aed7g2364 469 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 64 175 IPR040773 -
Aed7g2364 469 SUPERFAMILY TPR-like 178 372 IPR011990 GO:0005515
Aed7g2364 469 ProSiteProfiles PCI domain profile. 270 438 IPR000717 -
Aed7g2364 469 Pfam PCI domain 332 433 IPR000717 -
Aed7g2364 469 SUPERFAMILY "Winged helix" DNA-binding domain 361 443 IPR036390 -
Aed7g2364 469 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 440 465 IPR040780 -
Aed7g2364 469 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 48 469 - -
Aed7g2364 469 PANTHER - 48 469 - -
Aed7g2364 469 SMART PINT_4 367 450 IPR000717 -
Aed7g2364 469 Coils Coil 173 193 - -
Aed7g2364 469 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 367 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2364 Aed-Chr7 25682953 25686976 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2364 K03036 - gmx:100780845 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2364 7 25682953 25686976 Aed6g1027 6 14435458 14436660 PCT