Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2343 ATGGCAACGCACTCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAAGTGGAGTTTTATTTCAGCGATAGCAACCTTCTCAGCGATGGTTTTATGAGAAAGACTATCACTGAAAGCGAAGATGGCATTTTCATTATTGGCCTTGACTGTGACATCAAAGTGATTAGTTTGGCGCTGATTTGCTCTTTTAATCGAATGCGGAAGCACCTTGATTTGGGTGAAGTAAAGCCCGATGAAGTGGCTCAAGATACCGTGAATGCTGTTGCTGAAACTTTGAGAAATTCGTCTTCAGTCAAGGTTTCCGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTGTCACCATTTGAGCATGATCTAAAGCTTGAAGATGTGGAGAAATTCTTTGGGCAATATGCCAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTATTCTGTGGCACTGCTCTTGTTGAATTCTCTTCAGAGGAAGAAGTAGAAAAAGTTATGAAGGAAAAACTGGTATATGCCGGGGCTGAGTTAGAATTAAAACCAAAGAAGGATTTTGATGCAGAGAGAGAAAAAGAATTAGAGGATTATAAAAAATCTAGGCCACCTGTGGGTTCAAATCACCAAGATAACTCAAATGTAGAAGAAGGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCAATTCAGATGAGATTCCTTCAAAACAAAATGGTGTTGATCAACTAGCCAATGACAATAGTGTTGTCTCCAAACCTGATGAAAATTGCTGCTCTGAAATTACTTCTGGGGGAAATGACCAAATGGTAACAGAAAGTGATGACAATGCTGAAGAAAAAAATGAGGTGAAAGAAGCAAAGGAAACTGAAATTGAAGAAAAAATTGTAGAAGCAAAGGAATCTGGAAGTGAAGAAAACAAAGAGATGAAAGAAGCAAAGGTAGCTGAAGGTGAAGAAAAGAAACGACAAGCTGGTGAAAAAATTTCTGCCGCTGATTACAAGGACAACATGGATGTTGTCACACGTGAGGATTTGAAGAGTGTCTTTGAGAAATATGGTACAGTGAAGTACATTGATTTCAAGATTGGAGTCGAGTCTGGATACATCCGATTTGAAGAAGCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGACGGCTTGGTTGTTAAGAACTATATTGCTACTCTGGATCCATTGGCTGGTGAGGCCGAAAGAGAATACTGGAGCCTGCTTCGCGGTAATCAAGGCAAGCACCGAGATTTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGGGCAAACATGGTCGCCCTAGAGGGAATGACTATAGGGATCGCCCAAGAAAAGCTCAGAAAGTTGGTGCTGCATAA 1452 0.4125 MATHSLDEETTKKVIRQVEFYFSDSNLLSDGFMRKTITESEDGIFIIGLDCDIKVISLALICSFNRMRKHLDLGEVKPDEVAQDTVNAVAETLRNSSSVKVSEDGKKVGRTTELPKLEEVEQVEIRTLAVSPFEHDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKLFCGTALVEFSSEEEVEKVMKEKLVYAGAELELKPKKDFDAEREKELEDYKKSRPPVGSNHQDNSNVEEGYPKGLIIAFKLKSNSDEIPSKQNGVDQLANDNSVVSKPDENCCSEITSGGNDQMVTESDDNAEEKNEVKEAKETEIEEKIVEAKESGSEENKEMKEAKVAEGEEKKRQAGEKISAADYKDNMDVVTREDLKSVFEKYGTVKYIDFKIGVESGYIRFEEAEAAQKARAAAVISEKDGLVVKNYIATLDPLAGEAEREYWSLLRGNQGKHRDFKNKQGRGGWHGRGGKHGRPRGNDYRDRPRKAQKVGAA 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2343 483 PRINTS Lupus La protein signature 167 185 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aed7g2343 483 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aed7g2343 483 Gene3D - 6 118 IPR036388 -
Aed7g2343 483 MobiDBLite consensus disorder prediction 462 483 - -
Aed7g2343 483 Coils Coil 289 321 - -
Aed7g2343 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 187 IPR000504 GO:0003723
Aed7g2343 483 SUPERFAMILY RNA-binding domain, RBD 360 444 IPR035979 GO:0003676
Aed7g2343 483 Gene3D - 347 452 IPR012677 -
Aed7g2343 483 Gene3D - 119 217 IPR012677 -
Aed7g2343 483 PANTHER OS02G0610400 PROTEIN 4 483 - -
Aed7g2343 483 MobiDBLite consensus disorder prediction 266 291 - -
Aed7g2343 483 SUPERFAMILY RNA-binding domain, RBD 119 202 IPR035979 GO:0003676
Aed7g2343 483 MobiDBLite consensus disorder prediction 205 234 - -
Aed7g2343 483 ProSiteProfiles La-type HTH domain profile. 4 118 IPR006630 -
Aed7g2343 483 MobiDBLite consensus disorder prediction 205 221 - -
Aed7g2343 483 SUPERFAMILY "Winged helix" DNA-binding domain 6 117 IPR036390 -
Aed7g2343 483 MobiDBLite consensus disorder prediction 293 343 - -
Aed7g2343 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 211 IPR000504 GO:0003723
Aed7g2343 483 MobiDBLite consensus disorder prediction 443 483 - -
Aed7g2343 483 MobiDBLite consensus disorder prediction 266 343 - -
Aed7g2343 483 PANTHER LUPUS LA PROTEIN-RELATED 4 483 IPR045180 -
Aed7g2343 483 ProSiteProfiles xRRM domain profile. 341 469 IPR014886 GO:0003723
Aed7g2343 483 SMART la 8 111 IPR006630 -
Aed7g2343 483 Pfam RNA binding motif 360 452 IPR014886 GO:0003723
Aed7g2343 483 CDD LA_like_plant 10 110 - -
Aed7g2343 483 SMART rrm1_1 356 415 IPR000504 GO:0003723
Aed7g2343 483 SMART rrm1_1 127 199 IPR000504 GO:0003723
Aed7g2343 483 Pfam La domain 14 95 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2343 Aed-Chr7 25520920 25524626 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2343 K11090 - gmx:100786016 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1007 6 13816940 13821093 Aed7g2343 7 25520920 25524626 PCT