Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1007 ATGGCGCCACTGGACGAAGAAACCGCAAAGAAAGTCGTACGACAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCAAAGACAATTTTCTCAAGAAAACCGTCGCTGAAAGCGAAGATGGCTTGGTTAGTTTGGCTTTGATTTGCTCTTTTAATCGGATGCGGAAGCATCTTAATCTGGGGGATGTTAAGCTGGCTGGGGTGACCGAAGATACTGTTAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTTGTCAGAGTCTCAGAAGATGGGACCAAAGTTGGCAGGGCAACTGAACTTCTGAAGCCAGAAGAGGTAATTGAACAGGTAGAGATAAGGACAATTGCTGCATCACCATTTGAATTTGGTGTGAAGCTTGAAGATGTGGAGACATTCTTTGGTCAATATGCCAAGGTTAACAGTGTTCGGCTGCCTCGCCATGTTGGAGACAAAAGGTTTTTTTGTGGCACTGCCCTTGTTGAGTTTTCATCAGATGAAGAAATAGAAAACGTTTTGAAGCAAAGTCTGGTCTATGCGGGGGCTGAGCTAGAATTAAAGCCAAAGAAGGACTTTGATGCACAGAGAGAGAAAGAATTAGAAGAGCATGAAAAATTTGGTCCACCTGCAGGTTCAGATAACCAGAATAACACGAATACAGAGCCAGACTACCCTAAAGGCTTACTTATAGCTTTCAAGCTAAAGAGCATTTCTGATGAAGTTCCTTCGGAACAGAATAACTCTGATCAACAAACCAATGACAGTAATGTTGCCAAGGACAGTGATCAAAAGATATCAGAAAATGTTGACAACGATAAAGAAAACAATGGGTTGAGTGACAGAAAAAAGACTGAAGGTGAAGAAAAGAGCAAAAAAACTGATGGAAAAAATTCTGCTGCTGCTCACAAGGACAACAAGAATGTTGTCTCACGTGAGGATTTGAAGGATGTCTTTCAGAAGTTTGGTACTGTGAAGTACATTGATTTCAAGATGGGAGACGAGTCGGGATACATTCGGTTTGAAGAACCCGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAAAAGGAGGGCTTAGTAGTGAAGAATTTCATTGCTACTCTGGATCCAGTTGCTGGTGAGGCTGAGAAAGAATACTGGACCCTGCTTCGTGGTAATCAAGGAAAGGTCCGAGGAAGTACAAATAACCGAGGAAGGTAA 1206 0.4287 MAPLDEETAKKVVRQVEFYFSDSNLPKDNFLKKTVAESEDGLVSLALICSFNRMRKHLNLGDVKLAGVTEDTVKAVAQALKDSAFVRVSEDGTKVGRATELLKPEEVIEQVEIRTIAASPFEFGVKLEDVETFFGQYAKVNSVRLPRHVGDKRFFCGTALVEFSSDEEIENVLKQSLVYAGAELELKPKKDFDAQREKELEEHEKFGPPAGSDNQNNTNTEPDYPKGLLIAFKLKSISDEVPSEQNNSDQQTNDSNVAKDSDQKISENVDNDKENNGLSDRKKTEGEEKSKKTDGKNSAAAHKDNKNVVSREDLKDVFQKFGTVKYIDFKMGDESGYIRFEEPEAAQKARAAAVLSEKEGLVVKNFIATLDPVAGEAEKEYWTLLRGNQGKVRGSTNNRGR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1007 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 174 IPR000504 GO:0003723
Aed6g1007 401 SMART la 6 98 IPR006630 -
Aed6g1007 401 Gene3D - 107 205 IPR012677 -
Aed6g1007 401 Pfam RNA binding motif 307 401 IPR014886 GO:0003723
Aed6g1007 401 Gene3D - 1 102 IPR036388 -
Aed6g1007 401 ProSiteProfiles La-type HTH domain profile. 2 107 IPR006630 -
Aed6g1007 401 MobiDBLite consensus disorder prediction 240 307 - -
Aed6g1007 401 Pfam La domain 12 81 IPR006630 -
Aed6g1007 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 199 IPR000504 GO:0003723
Aed6g1007 401 PANTHER LUPUS LA PROTEIN-RELATED 4 395 IPR045180 -
Aed6g1007 401 SUPERFAMILY RNA-binding domain, RBD 106 192 IPR035979 GO:0003676
Aed6g1007 401 MobiDBLite consensus disorder prediction 260 307 - -
Aed6g1007 401 SUPERFAMILY RNA-binding domain, RBD 309 398 IPR035979 GO:0003676
Aed6g1007 401 PANTHER BNAANNG34180D PROTEIN 4 395 - -
Aed6g1007 401 SMART rrm1_1 306 364 IPR000504 GO:0003723
Aed6g1007 401 SMART rrm1_1 115 187 IPR000504 GO:0003723
Aed6g1007 401 MobiDBLite consensus disorder prediction 193 208 - -
Aed6g1007 401 PRINTS Lupus La protein signature 155 173 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aed6g1007 401 PRINTS Lupus La protein signature 15 32 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aed6g1007 401 PRINTS Lupus La protein signature 41 56 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aed6g1007 401 ProSiteProfiles xRRM domain profile. 291 401 IPR014886 GO:0003723
Aed6g1007 401 MobiDBLite consensus disorder prediction 193 225 - -
Aed6g1007 401 SUPERFAMILY "Winged helix" DNA-binding domain 5 100 IPR036390 -
Aed6g1007 401 MobiDBLite consensus disorder prediction 240 259 - -
Aed6g1007 401 CDD LA_like_plant 8 97 - -
Aed6g1007 401 Gene3D - 279 401 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1007 Aed-Chr6 13816940 13821093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1007 K11090 - gmx:100792984 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1007 6 13816940 13821093 Aed6g1007 6 13816940 13821093 ECH
Aed6g1007 6 13816940 13821093 Aed7g2343 7 25520920 25524626 PCT