Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1316 ATGGAAGTTCGCCACCGCCAGATCTCCACCGCCTCCGGCGAACACCGTCAAACCCAGAAGCTGCTGAAGGATAAGGATTCACAATCACAATCGCAATCTCACGCGCTCCTGCATCTCTACCTCACCAACGCGCTCTTCTTCGGCGTGTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGCTGGCGCGACAAGATCCGCACCGCCACTCCCCTCCACGCCGTCACCCCCTCCGAGACCGCCGCCATCGTCTCCCTCGTCGCCTCCGCCGTCTACCTTCTCGGCTTCTTCGGCGTCGCCTCCCGCACCTCCCTCGACGAGCTCTCCGACGACGAAATCGTCCTCCGCGAGGAAGACTCCCGCCCCCCAGGCTCCTGCCCGGCCGCCCTCGTCGACTCCTGCCCATCCCCCACCAAAATTCAAAACCAATTCCCCATCCCTCCCAGGGCAGCCGTCCACGACAACAACATCGTGACGAAGGAAAATCATTTTCCTTCGTCACGTGTCGTGGACGGGCCCACGCCTGCGCCCGCGATCTCCTTGTCCCTCGAGGACGAGGAGATCGTGCAGCAAGTAGTGACGGGCTCCATCCCATCCTACTCGCTCGAGTCGCGGCTCGAAGACACTCGTCGAGCCGCGGCGATCCGCCACGAGGCCGTCCAGAGGATGACCTCGCGGTCCCTGGAGGGCCTCCCTCTCTCGGGGTTCGACTACGACTCGATCCTCGGGCAGTGCTGCGAGATGCCGATCGGGTTCGTGCAGATTCCTGTGGGTGTAGCGGGGCCGTTGTTGCTGGACGGAAAGGAATACACTGTGCCAATGGCCACCACCGAAGGGTGCCTCGTCGCGAGCACCAACAGAGGCTGCAAAGCCATCTACGTCTCCGGCGGGGCCTCCTCCGTGCTGCTCCGGGACGGCATGACGAGAGCGCCCGTTGTTCGGTTTCCCTCGGCTCAGCGCGCCGCGCAGCTCAAGTTCTTCTTGGAGGATCCTATCAACTCCGATTCGCTTGCTGTCGTTTTCAATAAGTCAAGCAGATTTGCCAAGTTACAGAGTATTCAGTGTGCTATTGCAGGCAAGAATATGTACATGAGATTCCGTTGCAGCACTGGTGATGCTATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGACAGACTTCCCCGACATGGATGTTATTGGAATCTCTGGCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAACTGGATTGAAGGGCGTGGCAAGTCCGTGGTGTGTGAGGCTGTAATCAAGGAGGATGTGGTGAAGAAGGTGTTGAAGACCAGTGTGGAGTCCCTGGTCGAGCTTAACATGCTCAAAAACCTTACGGGATCAGCCATGGCCGGTGCTCTTGGTGGGTTCAATGCTCACGCTAGCAATATTGTGTCGGCTATCTACATTGCCACTGGTCAGGATCCTGCCCAAAATGTCGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTCAATGATGGCAAGGACCTTCACGTTTCCGTGACCATGCCCTCCATTGAGGTTGGCACTGTTGGAGGCGGCACGCAACTTGCATCTCAGTCAGCATGCCTTAATTTACTCGGTGTCAAGGGTGCCAGTAGAGAAACTCCAGGTGCAAATGCCAGGCTACTGGCCACCGTCGTAGCCGGTTCAGTCCTTGCCGGGGAGCTATCACTCATGTCTGCAATTGCAGCTGGACAACTTGTCAAGAGCCACATGAAATACAACAGATCTAATAGGGACATGTCTAAAATTGTCTAA 1794 0.5697 MEVRHRQISTASGEHRQTQKLLKDKDSQSQSQSHALLHLYLTNALFFGVFFSVAYFLLHRWRDKIRTATPLHAVTPSETAAIVSLVASAVYLLGFFGVASRTSLDELSDDEIVLREEDSRPPGSCPAALVDSCPSPTKIQNQFPIPPRAAVHDNNIVTKENHFPSSRVVDGPTPAPAISLSLEDEEIVQQVVTGSIPSYSLESRLEDTRRAAAIRHEAVQRMTSRSLEGLPLSGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASSVLLRDGMTRAPVVRFPSAQRAAQLKFFLEDPINSDSLAVVFNKSSRFAKLQSIQCAIAGKNMYMRFRCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEDVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASRETPGANARLLATVVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSNRDMSKIV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1316 597 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 573 586 IPR023076 GO:0004420
Aed7g1316 597 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 364 378 IPR023076 GO:0004420
Aed7g1316 597 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 597 - -
Aed7g1316 597 CDD HMG-CoA_reductase_classI 185 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Aed7g1316 597 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 184 588 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 183 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Aed7g1316 597 MobiDBLite consensus disorder prediction 1 23 - -
Aed7g1316 597 Gene3D - 255 583 IPR023074 GO:0004420
Aed7g1316 597 Gene3D - 179 254 IPR023282 GO:0004420
Aed7g1316 597 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 179 577 IPR009029 GO:0015936|GO:0016616
Aed7g1316 597 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 305 421 IPR009023 -
Aed7g1316 597 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 597 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 MobiDBLite consensus disorder prediction 1 26 - -
Aed7g1316 597 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 507 528 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 402 427 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 244 265 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 271 291 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 362 380 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 453 479 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 Pfam Hydroxymethylglutaryl-coenzyme A reductase 212 588 IPR002202 GO:0004420|GO:0015936
Aed7g1316 597 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 519 526 IPR023076 GO:0004420
Aed7g1316 597 Gene3D - 305 421 IPR009023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1316 Aed-Chr7 10910540 10914879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1316 4 594 Lipid Metabolism Gene Families AT1G76490 67.622 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1316 K00021 - gmx:100815480 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1102 11 16618973 16623118 Aed7g1316 7 10910540 10914879 ECH
Aed7g1316 7 10910540 10914879 Aed7g1316 7 10910540 10914879 ECH
Aed11g1102 11 16618973 16623118 Aed7g1316 7 10910540 10914879 PCT