Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1102 ATGGAACTTCGGCGGCGAGCCCTCCGTTTCGCTCCCGCCAGCGAACTTCCTTTGAAACCACCCAAACAGGACCCACACTCACAACAATCTTACCTGACCAACGTCGTATTCTTCGGTCTGTTCTTCTCGGTGGCATACTTCCTCCTAAGCCGATGGCGCGAGAAGATCCGCACCTCCACTCCCCTCCATGTGGTCACCCTCTCCGAGATGGCTGCCATCGTCTCCCTCATCGCCTCCTTCGTCTACCTCATGGCCTTCTTTGGCATTACCTTCATCCTCCACCCTTTTCTTCATTCCCGCTCTTCCACCGACGACGACGTCCTCGACCACCTCCACATTATTCCCACCCCCTGCCCCGCTGCCCTTCCTCCTCAAAAACTCCCTCTTTCCCCACTCCTCCACGACGACGAGGACATCGTCCTCGCCGTCGTGTCAGGCTCCATCCCATCCTACACGCTCGAATCGCGGCTCCAAGACTCCCGTCGAGCCGCGTCCATTCGGCACGAGGCGGTGGAGCGCATCACCGGGAGGTGTATTCAAGACCTCCCGGTGGAAGGCTTCGACTACGACTCCATTCTAGGACAGTGCTGTGAGATGCCGATCGGGTTCGTGCAGATCCCCGTCGGTGTCGCTGGGCCGTTGCTCCTCGACGGGAAGGAGTACACCGTTCCGATGGCCACCACGGAAGGCTGCTTGGTCGCTAGCACCAACAGAGGCTGCAAGGCCATTCACGTCTCCGGTGGAGCTTCCTCCATGCTCCTCCGTGACGCCATGACCAGAGCACCCGTGGTTAGATTCAACTCTGCCAAACGTGCCGCTCAGCTTAAGTTCTACTTGGAAGATCCTCTCAATTTCGATTCCCTTGCCGTCGTTTTCAACAAGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCTGCATTAGCAGGGAAGAATCTGTACATTAGATTCAGTTGCACTACCGGTGATGCCATGGGAATGAACATGGTTTCCAAAGGAGTGCAGAACGTGCTTAGTTTTCTTCAGAGCGATTTTCCTGACATGGATGTTATTGGAATATCTGGGAATTTCTGTTCTGATAAGAAGGCTGCGGCGGTGAACTGGATTGAGGGGCGAGGGAAATCGGTGGTGTGCGAGGCTGTAATTAAGGAAGAGGTGGTTAAGAAAGTGTTGAAGACTAGTGTGGAGGCTTTGATTGAACTTAACATGTTGAAAAATCTGACTGGGTCTGCTATGGCTGGTGCTCTTGGTGGCTTCAATGCTCATGCTAGCAACATCGTTTCTGCTATTTACTTGGCCACTGGACAGGATCCTGCTCAGAATGTGGAGAGTTCTCACTGCATAACTATGATGGAAGCTGTCAACCATGGCAAGGACCTTCACATTTCTGTTACTATGCCTTCCATTGAGGTGGGTACAGTTGGAGGGGGCACACAACTAGCGTCTCAATCAGCATGCCTTAATTTACTAGGAGTAAAGGGTGCGAGCAAAGAGTCCCCAGGAGCCAATTCTAGGTTATTAGCAACCATAGTGGCTGGTTCAGTCCTTGCAGGGGAACTCTCACTCATGTCTGCAATTGCAGCAGGCCAACTTGTTAATAGCCACATGAAATACAACAGATCTAGCAAGGATGTCACCAAAATTATTAATGCCTCCTCCTAA 1662 0.5241 MELRRRALRFAPASELPLKPPKQDPHSQQSYLTNVVFFGLFFSVAYFLLSRWREKIRTSTPLHVVTLSEMAAIVSLIASFVYLMAFFGITFILHPFLHSRSSTDDDVLDHLHIIPTPCPAALPPQKLPLSPLLHDDEDIVLAVVSGSIPSYTLESRLQDSRRAASIRHEAVERITGRCIQDLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIHVSGGASSMLLRDAMTRAPVVRFNSAKRAAQLKFYLEDPLNFDSLAVVFNKSSRFARLQDIKAALAGKNLYIRFSCTTGDAMGMNMVSKGVQNVLSFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALIELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCITMMEAVNHGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVTKIINASS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1102 553 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 471 478 IPR023076 GO:0004420
Aed11g1102 553 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 136 540 IPR004554 GO:0004420|GO:0005515|GO:0008299
Aed11g1102 553 Gene3D - 257 373 IPR009023 -
Aed11g1102 553 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 354 379 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 196 217 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 405 431 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 459 480 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 223 243 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 314 332 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 525 538 IPR023076 GO:0004420
Aed11g1102 553 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 136 540 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 258 373 IPR009023 -
Aed11g1102 553 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 131 549 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 316 330 IPR023076 GO:0004420
Aed11g1102 553 Pfam Hydroxymethylglutaryl-coenzyme A reductase 164 540 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 30 123 IPR002202 GO:0004420|GO:0015936
Aed11g1102 553 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 131 549 - -
Aed11g1102 553 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 30 123 - -
Aed11g1102 553 CDD HMG-CoA_reductase_classI 137 540 IPR004554 GO:0004420|GO:0005515|GO:0008299
Aed11g1102 553 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 132 529 IPR009029 GO:0015936|GO:0016616
Aed11g1102 553 Gene3D - 207 527 IPR023074 GO:0004420
Aed11g1102 553 Gene3D - 133 206 IPR023282 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1102 Aed-Chr11 16618973 16623118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1102 4 546 Lipid Metabolism Gene Families AT1G76490 71.454 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1102 K00021 - gmx:100790033 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1102 11 16618973 16623118 Aed7g1316 7 10910540 10914879 ECH
Aed11g1102 11 16618973 16623118 Aed11g1102 11 16618973 16623118 ECH
Aed11g1102 11 16618973 16623118 Aed7g1316 7 10910540 10914879 PCT