Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1270 ATGGCTCGAAGATCCCTCCCGCTCCTGAAGCACCTCCTCTTGCCGCGGATCCCCTCCCGATCCGTGACCTACATGCACCGTCCCGGCGACGGCACGCCGCGCCCGGTGACGCTGATCCCTGGCGACGGAATCGGGCCAATGGTGACCGGCGCGGTGGAGCAGATCATGGAGGCGATGCACGCGCCGGTCTACTTCGAGAAGTTCGAGGTCCACGGCAACATGAAGGCGGTGCCGCAGGAGGTCCTCGATTCGATTCGCAAGAACAAGGTCTGTCTGAAAGGAGGACTCGTCACGCCCATGGGCGGCGGCGTCAGCTCCCTCAATGTTCAGCTCCGGAAGGAGCTCGATCTCTACGCGTCGCTCGTTAACTGCTTCAACCTCCCTGGCCTTCCCACGCGTCACAATAACGTTGATATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACGCCGGCCTCGAACACGAGGTCATTCCCGGCGTTGTTGAAAGCCTTAAGTATTGGTTTATGTTTGCTGTTGATCCTCATATTTTACCAGGTCTAAATTTATCAGAGTGCCATGTATTTGGACAGCCCTATTTTGCTATCTTGGCAAAAAATATGTGCTTGTCCATCTCCACAGCAGAAACAGTCTTTGCCTCTGTGGAGATGGATAAAGTGACCCCAAATCTTTATGGAAATCTAGTTGCAAATACTGCAGCAGGCATTGCTGGGGGCACTGGAGTCATGCCAGGAGGTAATGTTGGGGCTGAGCATGCCGTGTTTGAGCAAGGTGCGTCAGCAGGAAATGTTGGTAGTGATATAATAAGGGAACAAAAGAAAGCCAATCCAGTGGCACTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTTGCTGACCGTTTGGAAACCGCTGTTGAAAAAGTCATTCTGGAGGGCAAATGCCGAACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAGGTTGTGGATGCAGTGATAGAGGCTTTAGATTGA 1011 0.5321 MARRSLPLLKHLLLPRIPSRSVTYMHRPGDGTPRPVTLIPGDGIGPMVTGAVEQIMEAMHAPVYFEKFEVHGNMKAVPQEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHNNVDIVVIRENTEGEYAGLEHEVIPGVVESLKYWFMFAVDPHILPGLNLSECHVFGQPYFAILAKNMCLSISTAETVFASVEMDKVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDIIREQKKANPVALLLSSAMMLRHLQFPAFADRLETAVEKVILEGKCRTKDLGGTSTTQEVVDAVIEALD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1270 336 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 34 335 - -
Aed7g1270 336 Pfam Isocitrate/isopropylmalate dehydrogenase 220 331 IPR024084 -
Aed7g1270 336 Pfam Isocitrate/isopropylmalate dehydrogenase 36 159 IPR024084 -
Aed7g1270 336 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 193 333 - -
Aed7g1270 336 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 17 171 - -
Aed7g1270 336 SMART Iso_dh_2 35 331 IPR024084 -
Aed7g1270 336 Gene3D Isopropylmalate Dehydrogenase 191 336 - -
Aed7g1270 336 Gene3D Isopropylmalate Dehydrogenase 19 175 - -
Aed7g1270 336 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 2, MITOCHONDRIAL 193 333 - -
Aed7g1270 336 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 2, MITOCHONDRIAL 17 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1270 Aed-Chr7 10318226 10323261 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1270 K00030 - gmx:100777867 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1270 7 10318226 10323261 Aed7g1270 7 10318226 10323261 ECH
Aed11g1143 11 16944008 16947685 Aed7g1270 7 10318226 10323261 PCT