Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1143 ATGGCGACGACACGATCCGCGCCGCTCCTGAAGCACCTCCTCAGCCGCCTGAACCCGTCACGCTCCGTGACGTACATGCCCCGGCCCGGCGACGGCACCCCTCGCGGCGTGACGCTGATCCCGGGCGACGGAATCGGGCCGCTGGTGACTGGCGCGGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGCTGTACTTCGAGAAGTACGATGTGCACGGCGACATGAATTCGGTGCCGGCGGAGGTGCTGGAATCGATCAGGAAGAACAAGGTGTGTCTGAAGGGAGGTCTGGCCACGCCCATGGGCGGTGGTGTAAACTCGCTGAACGTGCAGCTGAGGAAGGAGCTCGATCTCTACGCTTCGCTCGTTAACTGCTTCAACCTCCCTGGCCTCCCCACGCGCCACGACAACGTTGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCCGGCGTCGTCGAAAGCCTCAAGGTAACTCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGTATTGCTGGAGGCACTGGAGTCATGCCGGGAGGTAATGTTGGGGCTGATCATGCGGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATGAGAAAGTAGTAGAACAACAGAAAGCCAACCCAGTGGCACTCCTACTTTCGTCAGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTGCTGACCGATTGGAAACTGCCGTTAAAAAAGTGATTCTGGATGGCAAATACCGCACAAAGGACCTTGGAGGGACAAGCACCACTCAAGAGGTTGTTGATGCAGTGTTAGAGGCTTTAGACTGA 855 0.5696 MATTRSAPLLKHLLSRLNPSRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPLYFEKYDVHGDMNSVPAEVLESIRKNKVCLKGGLATPMGGGVNSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILDGKYRTKDLGGTSTTQEVVDAVLEALD 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1143 284 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 168 281 - -
Aed11g1143 284 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 168 - -
Aed11g1143 284 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 37 283 - -
Aed11g1143 284 SMART Iso_dh_2 36 279 IPR024084 -
Aed11g1143 284 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 168 281 - -
Aed11g1143 284 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 168 - -
Aed11g1143 284 Gene3D Isopropylmalate Dehydrogenase 26 167 - -
Aed11g1143 284 Pfam Isocitrate/isopropylmalate dehydrogenase 37 159 IPR024084 -
Aed11g1143 284 Pfam Isocitrate/isopropylmalate dehydrogenase 167 279 IPR024084 -
Aed11g1143 284 Gene3D Isopropylmalate Dehydrogenase 168 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1143 Aed-Chr11 16944008 16947685 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1143 K00030 - gmx:100778831 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1143 11 16944008 16947685 Aed11g1143 11 16944008 16947685 ECH
Aed11g1143 11 16944008 16947685 Aed7g1270 7 10318226 10323261 PCT