Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0632 ATGAAGCCGTGTCCAAAACTCAGCAACTCCTATGCTGTGGGGGTTTTCTGCACAGTTTTGTTATTGGGATTACAAGTAGTGAGGGTTGTTGAATGCAGAGTAGTAGCCAATAATGGATTGGACTGTTTCGAGTACTCTGCTATCAGCTGCCGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGAAAAACATCTAACACAAAGGCTTTTCAATATGCAATAAGCAATCTCAGCCATTATGCATCTGATGGTGGAGCTCTACTTTTTGTTCCACCAGGGAAATGGCTAACCGGAAGCTTCAATCTCACAAGCCGTTTCACACTTTTTCTCCACAACGAAGCTACCATTCTTGCATCTCAGGATGAATCAGAGTGGCCCCAACTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGGTTACAATGGGACAATTGATGGACAAGGGTCTTATTGGTGGGACAAGTTTCACAAGGGTGAATTGAAACTCACTAGGCCTTATATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATCTACAGCAGGTTTGACAAGGATTTTTTCATTTGGATTGATGATTCCTGTACTAACACTAGGATTGAAGATTGCTATATTGTCTCTGGTGATGATTGTATAGCAATAAAAAGTGGTTGGGATGAGTATGGAATCAAATTTGGAATGCCAAGCCAACACATCATAATCAGAAGGCTTGAATGTGTATCCCCAGACAGCTCTTATAGCTCACACCCTGACACTGGTTTTGATCCCAAAGCACTTCCCAACATCACTGGAATAAACTACAGAGATGTCATTGCAGATAATGTCACATATTCAGCAAGGCTTGACGGAATTGCTAATGACCCTTTTACAGGAATTTGTATTTCTAATGTGACCATCCATAGTGGGGAAAAGAAATTACAATGGAATTGCACGGACGTTGAGGGGGTTACAAGCAATGTCTATCCTAAGCCTTGTGAATTGCTGCCACTGAAGGAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAAGTTCCCATTGAAAGTGTTCAGCTGAGGACTTGTTCCTTTAAAAGGAGGATGAATAGTGGTCTACTTAAATCTGTGATTAGGAAGAATTTTTCTTCAGATCCTAGTACAACATTTGACTCTTGTGTTTTGCTTATTGATAAAGCTCAAAGTAATTGTGTTCATAAGTCTCCATGGCAATTTGACGTTCCTTCAGTAAACGAGGAAGAGGGAATTAAAAACAGGTCTAAAGTTGGATTATTTCTAAACAAAGTTTAA 1407 0.4016 MKPCPKLSNSYAVGVFCTVLLLGLQVVRVVECRVVANNGLDCFEYSAISCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLFVPPGKWLTGSFNLTSRFTLFLHNEATILASQDESEWPQLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYSRFDKDFFIWIDDSCTNTRIEDCYIVSGDDCIAIKSGWDEYGIKFGMPSQHIIIRRLECVSPDSSYSSHPDTGFDPKALPNITGINYRDVIADNVTYSARLDGIANDPFTGICISNVTIHSGEKKLQWNCTDVEGVTSNVYPKPCELLPLKEEKIECPYPDDKVPIESVQLRTCSFKRRMNSGLLKSVIRKNFSSDPSTTFDSCVLLIDKAQSNCVHKSPWQFDVPSVNEEEGIKNRSKVGLFLNKV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0632 468 Gene3D - 44 284 IPR012334 -
Aed7g0632 468 Gene3D - 285 364 IPR012334 -
Aed7g0632 468 Pfam Pectate lyase superfamily protein 58 112 IPR024535 -
Aed7g0632 468 SUPERFAMILY Pectin lyase-like 48 396 IPR011050 -
Aed7g0632 468 PANTHER PECTIN LYASE-RELATED 286 396 - -
Aed7g0632 468 PANTHER PECTIN LYASE-RELATED 17 286 - -
Aed7g0632 468 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 286 396 - -
Aed7g0632 468 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 17 286 - -
Aed7g0632 468 Pfam Glycosyl hydrolases family 28 151 216 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0632 Aed-Chr7 4700268 4703733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0632 16 395 Glycoside Hydrolase AT3G48950 48.918 6.53e-141 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0632 - - gmx:100785005 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0632 7 4700268 4703733 Aed7g0632 7 4700268 4703733 ECH
Aed7g0632 7 4700268 4703733 Aed1g2304 1 19129242 19131351 PCT