Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2304 ATGTCTCATACCATGAAGTTGTGTCCACGACTCCGAATTTCCTATGTAGTCATTGGGGCGATCTCTTTAGTTCTGATATTGGAATCGCTACTAAATGTGGCGAGTGGGGCGAAGGATATTAAATACCCTGCCATAAATTGTCGAAAGCACAGTGCAGTTTTGACAGAATTTGGTGGGATTGGTGATGGCGTAACATCCAACACCAAGGCCTTTCGAAATGCAATGAGCAAACTTAGCCAATATGCTTCTGATGGAGGTGCAACACTTGTTGTGCCACCAGGGAAATGGCTAACTGGACCCTTTAATCTCACAAGCCAATGGCCCCATCTTCCTGTGCTACCTTCATATGGAAGAGGAAGAGATGCTCCCGGTGGAAGGTTTAGCAGTCTGATTTTTGGAACTAACCTCACCGATGTTGTAATTACCGGCCAAAATGGTAAAATTGACGGGCAAGGAGCTTATTGGTGGAACAAATTCCATAAGAAGCAATTGACTCTCACCAGACCATACTTGATTGAGCTCATGTATTCTGATCAAATCCAGATTTCATATCTCACTTTGGTCGATTCCCCAACCTGGTTTATCCATCCAGTTTACAGCAGTAACATAATAATGCAAGGGCTTAACATTACAGCACCAGTGGACTCTCCCAACACAGATGGGATAAACCCAGATTCATGTTCAAACATTAGGATTCAAGACTGCTACATAGTTTCGGGTGATGACTGCATTGCAGTGAAAAGTGGGTGGGACGAGTATGGAATTAGATTTGGAAGGCCAACACAACATTTGAGCATTAGAAGGATCACATGTGTATCCCCTGACAGTGCCATGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATACAAGATGTTAGAGCTGAAAACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATAAAATCAGCAATTGGCAGAGGTGGATTTGTGAAGGATATATTTGTCCAAGGAATGACCCTTAAAACCATGAAACATGTGTTTTGGATGACTGGAACTTATGGATCACACCCTGACCCTGGCTATGATCCCAAAGCACTACCTAACATTACTGGGATAAATTACAGAGACACTGTTGCAACGAATGTCACATATTCTGCGAGACTTGAAGGAATTAGCAATGATCCTTTTACTGGAATCTGCCTTTCTAATGTGAATATCCAAGTGAGTGAACAAAAGAAGAAGCTTCAATGGAATTGCACAAACGTTGCTGGAGTTGCAAGCAGCGATGTCACTCCTACCCCTTGTCAATTGCTGCCAACGAAAGGCCAATTCAACTGTGCTTTTCCAACTGACACACTCCCCATTGACAAAGTTCAGCTCAAGTCTTGTTACTCTACTGTCAACTACTAA 1374 0.4287 MSHTMKLCPRLRISYVVIGAISLVLILESLLNVASGAKDIKYPAINCRKHSAVLTEFGGIGDGVTSNTKAFRNAMSKLSQYASDGGATLVVPPGKWLTGPFNLTSQWPHLPVLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGQNGKIDGQGAYWWNKFHKKQLTLTRPYLIELMYSDQIQISYLTLVDSPTWFIHPVYSSNIIMQGLNITAPVDSPNTDGINPDSCSNIRIQDCYIVSGDDCIAVKSGWDEYGIRFGRPTQHLSIRRITCVSPDSAMIALGSEMSGGIQDVRAENLTAINTQSAVRIKSAIGRGGFVKDIFVQGMTLKTMKHVFWMTGTYGSHPDPGYDPKALPNITGINYRDTVATNVTYSARLEGISNDPFTGICLSNVNIQVSEQKKKLQWNCTNVAGVASSDVTPTPCQLLPTKGQFNCAFPTDTLPIDKVQLKSCYSTVNY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2304 457 Pfam Glycosyl hydrolases family 28 130 413 IPR000743 GO:0004650|GO:0005975
Aed1g2304 457 Gene3D - 33 419 IPR012334 -
Aed1g2304 457 PANTHER PECTIN LYASE-RELATED 32 452 - -
Aed1g2304 457 SUPERFAMILY Pectin lyase-like 48 452 IPR011050 -
Aed1g2304 457 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 32 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2304 Aed-Chr1 19129242 19131351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2304 10 452 Glycoside Hydrolase AT3G48950 62.313 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2304 - - gmx:100794916 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2304 1 19129242 19131351 Aed1g2304 1 19129242 19131351 ECH
Aed7g0632 7 4700268 4703733 Aed1g2304 1 19129242 19131351 PCT