Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0601 ATGTGTTCTACTGGGTTTTCATCATCTTCCACTGCTGAGGAAGTTACTCAAGGAATCGATGGGACTGGCCTCACTGCAATTGTCACAGGAACAACCCATGGTATTGGCACTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTGCATGTGATTATGGCTGCGAGAGATGTGATTGCTGCAAAAGCCGTCAAAGAAGCAATACTTAAAGAGATTCCCACAGCCATAGTTGAAGCCATGGAGTTGGATCTTAGCTCAATGGCATCCGTTAGGAAGTTTGCATCAGAGTTCATTTCATCTACTCTTCCATTGAACATCTTGATAAACAATGCAGGAATATGTGCATTCCCTTTCACGCTGTCCAAAGACAACATCGAACTACAGTTTGCCACAAATCACTTAGGTCATTTTCTTTTAACAAATCTTTTGTTGGATACTATGAAAAAAACTGCAAGTGAAAGCAAAAAAGAAGGAAAAATTATTAATGTCTCCTCTGATGGTCACCATTATACATATCCCGAAGGAATCCTTTTTGATCAAATTAATGATGAATCAAGTTACCAGAATTGGCGTGCATATGGGCAATCAAAGCTGGCTAACATTTTACATGCTAATGAACTTGCAAGACTTCTTAAAGAAGATGGGATAGATATCACTGCGAATTCTCTTCATCCAGGAGCTATTATGACCGAAATTTATAAACCAGAGCTGAGTGGCCCTGTGCCAACTGATCTAATTAATCTGCTTGGGAAAAATTATCTGCTTAAAAGTATCCAGCAGGGAGCAGCAACAACATGCTATGTAGCGTTGCACCCAGAAGTGAGGGGAATTAGTGGAGAGTATTTTTCAGATAAGAAGAATCGAATTGAGAGAAACATGTGGCCATTCAGCAGAAAAGGGGCTTCCGGGTTTTCATCATATTCAACAGCTGAGGAAGTTACTCATGGAATCGATTCTACTGGCCTAACCGCTATTGTTACAGATATAAAAGAAGTAATACTCAAAGAGATTCCCACAGCAAAAGTTGATGCCATGGAGTTAGACCTTAGTTCAATGGCATCTGTTCGGAAATTTGCATCAGAGTTCATTTCATCTGCTCTTCCATTAAACATTCTCATAAACAATGCAGGAGTTTTCGCAACCCCTTTCATGCTGTCTGAAGACAACATTGAACTGCAATTTGCCACAAATCACTTGGGTCATTTTCTATTAACAAATCTGTTGTTGGATACTATGAAGAAAACAACACGTGAAAGTCAGAAACAAGGAAGAATTATTAACGTCTCCTCAAAATCTCATCAATTAACGTATCATGAAGGAATCCTTTTTGATAAAATTAATGATCCTTCAAGTTACCAGAATTGGCTTGCATATGGACAATCAAAGCTTGCTAACATTTTACATTCCAACGAACTTGCAAGATGCCTCAAGGAAGATGGTGTAGATATCACTGCTAATTCTCTTCATCCGGGAGCAGTTGCCACCAATGTTTTTCGTTACAACAGTGTACTGGCTGGTGCAGTTAATATGCTGGGGAGATTCGTGATTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAGGGGAATCAGTGGCGAGTACTTTTCAGATTGTAATCTTGTCACAGCAAACTCACAGGGAAGGGACACTGATTTGGCCAAGAAACTCTGGGATTTTAGCTTGAATTTGATCAAGTAG 1719 0.4002 MCSTGFSSSSTAEEVTQGIDGTGLTAIVTGTTHGIGTETARVLALRGVHVIMAARDVIAAKAVKEAILKEIPTAIVEAMELDLSSMASVRKFASEFISSTLPLNILINNAGICAFPFTLSKDNIELQFATNHLGHFLLTNLLLDTMKKTASESKKEGKIINVSSDGHHYTYPEGILFDQINDESSYQNWRAYGQSKLANILHANELARLLKEDGIDITANSLHPGAIMTEIYKPELSGPVPTDLINLLGKNYLLKSIQQGAATTCYVALHPEVRGISGEYFSDKKNRIERNMWPFSRKGASGFSSYSTAEEVTHGIDSTGLTAIVTDIKEVILKEIPTAKVDAMELDLSSMASVRKFASEFISSALPLNILINNAGVFATPFMLSEDNIELQFATNHLGHFLLTNLLLDTMKKTTRESQKQGRIINVSSKSHQLTYHEGILFDKINDPSSYQNWLAYGQSKLANILHSNELARCLKEDGVDITANSLHPGAVATNVFRYNSVLAGAVNMLGRFVIKNVQQGAATTCYVALHPQVRGISGEYFSDCNLVTANSQGRDTDLAKKLWDFSLNLIK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0601 572 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Aed7g0601 572 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Aed7g0601 572 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Aed7g0601 572 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Aed7g0601 572 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 330 549 IPR036291 -
Aed7g0601 572 CDD retinol-DH_like_SDR_c_like 23 285 - -
Aed7g0601 572 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 285 - -
Aed7g0601 572 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 328 572 - -
Aed7g0601 572 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 299 326 - -
Aed7g0601 572 CDD retinol-DH_like_SDR_c_like 327 564 - -
Aed7g0601 572 Pfam short chain dehydrogenase 318 435 IPR002347 -
Aed7g0601 572 Pfam short chain dehydrogenase 25 173 IPR002347 -
Aed7g0601 572 Gene3D - 19 300 - -
Aed7g0601 572 Gene3D - 301 572 - -
Aed7g0601 572 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 285 IPR036291 -
Aed7g0601 572 PANTHER RETINOL DEHYDROGENASE 2 285 - -
Aed7g0601 572 PANTHER RETINOL DEHYDROGENASE 299 326 - -
Aed7g0601 572 PANTHER RETINOL DEHYDROGENASE 328 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0601 Aed-Chr7 4443126 4451604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0601 27 231 Acyl Lipid Metabolism Gene Families AT3G55310 31.455 1.22e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0601 - - gmx:100794358 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2285 1 18965419 18975820 Aed7g0601 7 4443126 4451604 PCT