Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2285 ATGTGGCCATTCAGCAAAAAAGGGACTTCTGGGTTTTCATCATCATCCACTGCAGAGCAGGTTACTGAAGGAATTCATGGAACTGGTCTCACTGCAATTGTCACAGGTCCCCTCACTTCTTCTACCCTTTTCTTTTTCTTGCATAATTCCAAGATGGGGGCATCCAGTGGTATTGGCACCGAGACTACACGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAACAATACTTAAGGAGATTCCCTCCGCTAAAGTTGATTCCATGGAGTTAGATCTCAGTTCCATGGAGTCTGTCAAGAAATTTGCATCAGAGTTTAAGTCCTCTGGAATTATGGCATGCCCTTTCAAGCTCTCTAAAGACAAAATTGAATTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCAAGTGAAATGAAGAAAGAAGGAAGAATTGTTATTGTCTCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATCCGTTTTGACAAAGTTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTGCATGCAAATGAACTTACAAGACGCCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGTCATAACAGTGCAGTAAACGGTCTAATTAGTGTGATTGGGAAACTCGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGTTATGTAGCATTGCACCCACAAGTGAAGGGAATAAGTGGCAAATATTTTTCAGACAGTAATGTGGCCAATACAACCGCACAGGGGACAGACGCTGGTGGTGGTGCAACGCTGAGTTGTTGTGTGCAGAAGATGTGGCCATTCAGCAGAAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCAGAGCAGGTTACTTCAGGAATTGATGGAACTGGTCTCACTGCCGTTGTCACAGGAGCATCCAGTGGTATTGGCACTGAAACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGCGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGATACAATACTTAAGGAGATCCCCTCCGCTAAAGTTGATGTCATGGAGTTAGATCTCAGTTCCATGGAGTCTGTCAAGAATTTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAATATCTTGATAAACAATGCAGGAATTATGGCATGCCCTTTCAAGCTTTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACCAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCCTCTGAAGCTCACCGATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGATGAATCAAGTTACAAAAACTGGGGTGCATATGGGCAATCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAATGATTGCCACCAATATTTCCCGTCATATCAGTGGAGTGAACGGTCTTCTTAAGGCTATTGCAGGACTTGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGCAAGTATTTTTCAGCCAGTAATGTGGCCAAAACAACCTCACAGGGGACTGATGCTGATTTGGCCCAGAAACTATGGGATTTCAGCATGAATTTGACCAAGTAA 1890 0.4196 MWPFSKKGTSGFSSSSTAEQVTEGIHGTGLTAIVTGPLTSSTLFFFLHNSKMGASSGIGTETTRVLALRGVHVIMGVRNMLAAKDVKETILKEIPSAKVDSMELDLSSMESVKKFASEFKSSGIMACPFKLSKDKIELQFATNHIGHFLLTNLLLDTMKKTSSEMKKEGRIVIVSSEAHRFAYSEGIRFDKVNDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGTITTNLFRHNSAVNGLISVIGKLVLKNVQQGAATTCYVALHPQVKGISGKYFSDSNVANTTAQGTDAGGGATLSCCVQKMWPFSRKGASGFSSSSTAEQVTSGIDGTGLTAVVTGASSGIGTETTRVLALRGVHVIMGVRNMLAAKDVKDTILKEIPSAKVDVMELDLSSMESVKNFASEFKSSGLPLNILINNAGIMACPFKLSKDKIELQFATNHIGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFAYSEGIRFDKINDESSYKNWGAYGQSKLANILHANELTRRLKEDGVDISANSLHPGMIATNISRHISGVNGLLKAIAGLVLKNVQQGAATTCYVALHPQVKGISGKYFSASNVAKTTSQGTDADLAQKLWDFSMNLTK 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2285 629 Pfam short chain dehydrogenase 347 493 IPR002347 -
Aed1g2285 629 Pfam short chain dehydrogenase 53 183 IPR002347 -
Aed1g2285 629 Gene3D - 26 320 - -
Aed1g2285 629 Gene3D - 340 629 - -
Aed1g2285 629 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 294 IPR036291 -
Aed1g2285 629 CDD retinol-DH_like_SDR_c_like 53 305 - -
Aed1g2285 629 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 345 600 IPR036291 -
Aed1g2285 629 CDD retinol-DH_like_SDR_c_like 345 621 - -
Aed1g2285 629 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 52 305 - -
Aed1g2285 629 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 37 - -
Aed1g2285 629 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 318 629 - -
Aed1g2285 629 PANTHER RETINOL DEHYDROGENASE 52 305 - -
Aed1g2285 629 PANTHER RETINOL DEHYDROGENASE 318 629 - -
Aed1g2285 629 PANTHER RETINOL DEHYDROGENASE 2 37 - -
Aed1g2285 629 PRINTS Glucose/ribitol dehydrogenase family signature 473 489 IPR002347 -
Aed1g2285 629 PRINTS Glucose/ribitol dehydrogenase family signature 537 554 IPR002347 -
Aed1g2285 629 PRINTS Glucose/ribitol dehydrogenase family signature 347 364 IPR002347 -
Aed1g2285 629 PRINTS Glucose/ribitol dehydrogenase family signature 423 434 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2285 Aed-Chr1 18965419 18975820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2285 347 577 Acyl Lipid Metabolism Gene Families AT1G62610 27.869 2.54e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2285 - - gmx:100783465 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2285 1 18965419 18975820 Aed1g2285 1 18965419 18975820 ECH
Aed7g0602 7 4451952 4455442 Aed1g2285 1 18965419 18975820 PCT
Aed1g2285 1 18965419 18975820 Aed7g0601 7 4443126 4451604 PCT