Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0546 ATGGGAAATTCATTTGGGTGTTCGGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGCTTGAGGCGAAGATGCTTCTAGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTTGGGGGTCTCAATTCGCCTCTTCATTTTGCCGCTTCCAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTCGAGAAACTATTGTGGGCAGACCGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAGACCCTGCTGCTCTTAAGATGCAATGTTATGAAGGCAGATTATCTCAGCGGGAGGACAGCTCTGCACTTTGCAGCCATCAATGGGCATGCAAGATGCATTAGGCTTGTCTTGGCAGATTTTGTTCCAAGTGCTCCTTTTGAAGCTTTACATGCTCGCATGGATGCTGAGGGCAATGGACCAAATGTGAAAAACAAACATGAACAAAGTGCGCTGTCCAAATTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCGGCATTGAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGTCATGATGCTCTTATCTTTTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCGTTGCTGACACCCACTTCTGATGCCACAACATCGTCATTCCCTTCTTCAAATTATTTATCCTTGCCTCTTATGAGTGTGCTCAACATTGCCAGAGAATGTGGACTGCAACCGACTACAACCTCCGCTAACGAAGTTGATGTTTGTGCTGTCTGCCTGGAGAGGCAATGTTCAGTGGCTGCCGAAGGATGTGGGCATGGGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAAACGTGTGGACCTCCTGGCTCTATTCCTTGTCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAGTTACACATGTCTCTCAGCCTGTGTACCCCATGCATTCTACATCCACGTGACCTAGATCGACCGTCTCTTCCTCATACCCCTGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCATCTGAGATGCTTTGCCCTGTCACTTGTACTCCATTTCCATCTGTAGCAATTCCTCTGTGTACATGCAATCATGGTCCTTGTCCATCATTTGAACCCCGCGAAGCAGAAGCACAAGATGAATCGCCTCACCACTCACAAGCTTCGATGATGGATCAGGATAAAATGGATGGTCCAAGGCTGGAGAAAACAACATGCTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1500 0.46 MGNSFGCSASGERLVSAARDGDLLEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLLRCNVMKADYLSGRTALHFAAINGHARCIRLVLADFVPSAPFEALHARMDAEGNGPNVKNKHEQSALSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANVSAATFHYGTSMDLIVMMLLSFQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATTSSFPSSNYLSLPLMSVLNIARECGLQPTTTSANEVDVCAVCLERQCSVAAEGCGHGLCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHMSLSLCTPCILHPRDLDRPSLPHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNHGPCPSFEPREAEAQDESPHHSQASMMDQDKMDGPRLEKTTCSGMFWGRRSCSREHQCNSEINA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0546 499 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Aed7g0546 499 SUPERFAMILY RING/U-box 305 362 - -
Aed7g0546 499 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 499 - -
Aed7g0546 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 365 IPR013083 -
Aed7g0546 499 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Aed7g0546 499 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Aed7g0546 499 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Aed7g0546 499 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Aed7g0546 499 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Aed7g0546 499 MobiDBLite consensus disorder prediction 444 474 - -
Aed7g0546 499 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Aed7g0546 499 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Aed7g0546 499 Gene3D - 8 171 IPR036770 -
Aed7g0546 499 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Aed7g0546 499 SMART ANK_2a 77 106 IPR002110 GO:0005515
Aed7g0546 499 SMART ANK_2a 176 205 IPR002110 GO:0005515
Aed7g0546 499 SMART ANK_2a 44 73 IPR002110 GO:0005515
Aed7g0546 499 SMART ANK_2a 111 142 IPR002110 GO:0005515
Aed7g0546 499 SUPERFAMILY Ankyrin repeat 14 261 IPR036770 -
Aed7g0546 499 Pfam Ankyrin repeats (many copies) 171 216 IPR002110 GO:0005515
Aed7g0546 499 ProSitePatterns Zinc finger RING-type signature. 321 330 IPR017907 -
Aed7g0546 499 Pfam Ankyrin repeat 112 132 IPR002110 GO:0005515
Aed7g0546 499 MobiDBLite consensus disorder prediction 445 472 - -
Aed7g0546 499 Gene3D - 172 261 IPR036770 -
Aed7g0546 499 ProSiteProfiles Zinc finger RING-type profile. 306 356 IPR001841 -
Aed7g0546 499 PANTHER HOMEOBOX PROTEIN WARIAI 1 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0546 Aed-Chr7 4010649 4015856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0546 17 260 Miscellaneous Gene Families AT5G02620 27.309 3.41e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0546 K19044 - gmx:100812809 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0546 7 4010649 4015856 Aed7g0546 7 4010649 4015856 ECH
Aed7g0546 7 4010649 4015856 Aed1g2237 1 18627827 18632554 PCT