Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2237 ATGGGGAATTCGTTCGGATGTTCGGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTGGTGGAGGCGAAGATGCTTTTGAACTGCAACCCATGTCTCGCCAATGCTAATTTTCAGTATTGGAGGGAGGACTCCGTTTTGTGTTTAGAAATTGGAATATACATTTTTCAATTTCGGACGGCGCTGATGCAAGCTTGTAGATATGGCCATTGGGAGGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCTCCTTATCAAGCTATACATGGTGGCACAGATGTTGACAGGGGTAGTGGGTCAAATGCAAAAGGCAAACATGAGCAAAGTGCCCTGTCCAAGTTTGTAAATAAGACCGCTGATGGAGGTATCACTGCCCTTCATATGGCTGCGTTAAATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCCAATGTGTCAGCTGTGACATATCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGTTCTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGGTAAGAATTGCTTTAGTTTTGATTGTGGTATACCTTATGGTCCTTTCCTTTGAAACTGGAAATGATGTTATTCCTTTTCAGATCCTTGTTTCCCGAGGTGCAAGTCGGATGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGTCGTCACTGGCTTGAACAATTGCTAGCACCCAGTTCTGATGCCACAGTACCTACATTCTCTCATTCAAATTACTTGTCCTTGCCTCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGTTTGCAATCATCTACAACCTACTCTGATGAGATTGACTTTTGTGCTGTATGCCTAGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGTCATGAGCTTTGTGTAAGTTGTGCACTCTATCTTTGCTCAACAAACAATGTTTCTTCTGAAATTCTTGGCCCTCCTGGCTCCATCCCTTGCCCCCTATGTAGACATGGAGTTGTCACTTTTGTTAAGTTGCCAGGTTCCCAAGCGAAAGAAAATAAATTACATGTGTCGCTTGGCCTGTGTACCCCATGCATTCTACATCCACGTGACCTAGACCAGCCATCCCTTTCTGATACACCAGATATCGGAAGAAATCGTGTAGCTTCTGTTCCTTCAGAGATACTCTGCCCCGTCACTTGTAGTCCATTTCCATCTATGGCAATCCCCCTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCGGTGAAGTAGAAACACAAGATGGATCACCTCATCACTCTCAAGCATCAACAGTGGATCAGGATAAAATTGAAGGGCCAAGACTGGATAAAACAACCTGCTCTAGCATGTTCTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAGTGCAATTCAGAAATAAATGCTTGA 1569 0.4493 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLANANFQYWREDSVLCLEIGIYIFQFRTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHGGTDVDRGSGSNAKGKHEQSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVSAVTYHYGTSMDLIGAGSSPLHYAACGGNLKCCQVRIALVLIVVYLMVLSFETGNDVIPFQILVSRGASRMALNCNGWLPLDIARMWGRHWLEQLLAPSSDATVPTFSHSNYLSLPLMSVLNIAREYGLQSSTTYSDEIDFCAVCLERPCSVAAEGCGHELCVSCALYLCSTNNVSSEILGPPGSIPCPLCRHGVVTFVKLPGSQAKENKLHVSLGLCTPCILHPRDLDQPSLSDTPDIGRNRVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPGEVETQDGSPHHSQASTVDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2237 522 ProSiteProfiles Ankyrin repeat profile. 94 115 IPR002110 GO:0005515
Aed1g2237 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 225 - -
Aed1g2237 522 SMART ANK_2a 60 89 IPR002110 GO:0005515
Aed1g2237 522 SMART ANK_2a 160 189 IPR002110 GO:0005515
Aed1g2237 522 SMART ANK_2a 203 232 IPR002110 GO:0005515
Aed1g2237 522 SMART ANK_2a 94 124 IPR002110 GO:0005515
Aed1g2237 522 Pfam Ankyrin repeats (3 copies) 158 221 IPR002110 GO:0005515
Aed1g2237 522 Pfam Ankyrin repeats (3 copies) 17 115 IPR002110 GO:0005515
Aed1g2237 522 ProSiteProfiles Zinc finger RING-type profile. 329 379 IPR001841 -
Aed1g2237 522 PANTHER HOMEOBOX PROTEIN WARIAI 1 225 - -
Aed1g2237 522 Gene3D - 7 147 IPR036770 -
Aed1g2237 522 ProSiteProfiles Ankyrin repeat region circular profile. 160 189 - -
Aed1g2237 522 MobiDBLite consensus disorder prediction 468 494 - -
Aed1g2237 522 ProSiteProfiles Ankyrin repeat region circular profile. 94 115 - -
Aed1g2237 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 241 522 - -
Aed1g2237 522 Gene3D - 148 287 IPR036770 -
Aed1g2237 522 ProSiteProfiles Ankyrin repeat profile. 160 192 IPR002110 GO:0005515
Aed1g2237 522 ProSitePatterns Zinc finger RING-type signature. 344 353 IPR017907 -
Aed1g2237 522 PRINTS Ankyrin repeat signature 95 110 IPR002110 GO:0005515
Aed1g2237 522 PRINTS Ankyrin repeat signature 176 190 IPR002110 GO:0005515
Aed1g2237 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 402 IPR013083 -
Aed1g2237 522 SUPERFAMILY RING/U-box 325 385 - -
Aed1g2237 522 PANTHER HOMEOBOX PROTEIN WARIAI 241 522 - -
Aed1g2237 522 SUPERFAMILY Ankyrin repeat 14 284 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2237 Aed-Chr1 18627827 18632554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2237 63 199 Miscellaneous Gene Families AT1G07710 33.571 3.54e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2237 K19044 - gmx:100793886 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2237 1 18627827 18632554 Aed1g2237 1 18627827 18632554 ECH
Aed7g0546 7 4010649 4015856 Aed1g2237 1 18627827 18632554 PCT